fatal error: fit_column.h: No such file or directory

[annabananakobana]

Hi there,

Getting the following error during install:

`/nobackup/*/cactus/cactus_env/cactus/clapack/F2CLIBS -I../api/inc -Iimpl -Iinc -I../liftover/inc -I../liftover/inc -c impl/halPhyloPMain.cpp >impl/halPhyloPMain.depend In file included from impl/halPhyloPMain.cpp:9:0: inc/halPhyloP.h:18:24: fatal error: fit_column.h: No such file or directory

include "fit_column.h"

                    ^

compilation terminated. make[1]: * [../objs/phyloP/impl/halPhyloPMain.o] Error 1 make[1]: Leaving directory '/scale_wlg_nobackup/filesets/nobackup//cactus/cactus_env/cactus/hal/phyloP' make: [phyloP.progs] Error 2`

Renaming the library files, for example phast_fit_column.h to fit_column.h runs into further errors:

In file included from /scale_wlg_persistent/filesets/opt_cray/cm_shared/opt/gcc/6.1.0/snos/include/g++/iterator:66:0, from /scale_wlg_persistent/filesets/opt_cray/cm_shared/opt/gcc/6.1.0/snos/include/g++/backward/hashtable.h:63, from inc/halPhyloP.h:19, from impl/halPhyloPMain.cpp:9: /scale_wlg_persistent/filesets/opt_cray/cm_shared/opt/gcc/6.1.0/snos/include/g++/backward/hashtable.h:1129:3: error: template with C linkage template<class _Val, class _Key, class _HF, class _Ex, class _Eq, class _All> ^~~~~~~~ make[1]: *** [../objs/phyloP/impl/halPhyloPMain.o] Error 1 make[1]: Leaving directory /scale_wlg_nobackup/filesets/nobackup/xx/x_hal/hal/phyloP make: *** [phyloP.progs] Error 2

Suspecting a systematic error related to compilers.

Any suggestions?

Thanks in advance, Anna

[diekhans]

http://compgen.cshl.edu/phast/downloads/phast.v1_5.tgz contains phast/include/fit_column.h It looks like it was renamed in github, but that is not in a release. Please download version 1.5

[annabananakobana]

Thanks, that got it! :)