Add chop-vg-paths. It takes in a bed file, and cuts those intervals out of the graph. Intended use case: removing softmasked sequence after cactus pangenome pipeline.
Not sure if this repo's the best home for this, but it had the necessary build framework set up to get started quickly, so it'll do for now.
Add
chop-vg-paths. It takes in a bed file, and cuts those intervals out of the graph. Intended use case: removing softmasked sequence after cactus pangenome pipeline.Not sure if this repo's the best home for this, but it had the necessary build framework set up to get started quickly, so it'll do for now.