clip-vg has slowly become a catch-all postprocessing tool in the cactus pangenome pipeline. Here we add path forwardization for the reference paths (selected with -e). This ensures that these paths will be represented only as forward steps in the output graph, allowing them to be expressed as rGFA tags (which don't support reverse orientations)
clip-vghas slowly become a catch-all postprocessing tool in the cactus pangenome pipeline. Here we add path forwardization for the reference paths (selected with-e). This ensures that these paths will be represented only as forward steps in the output graph, allowing them to be expressed as rGFA tags (which don't support reverse orientations)