ComparativeGenomicsToolkit / hal2vg

Convert HAL to VG
MIT License
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Flip-flop on mandatory reference haplotype #65

Closed glennhickey closed 1 year ago

glennhickey commented 1 year ago

This basically reverts #63, which was an over-reaction to what turned out to be a regression in vg v1.50.0, in favour of keeping things the way they were (which has been used in mingraph-cactus for some time now).

(We do keep the test-fixing changes from the previous PR though..)