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ComparativeGenomicsToolkit / hal2vg

Convert HAL to VG
MIT License
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clip-vg option to not abort when forwardizing cyclic reference #70

Closed glennhickey closed 3 months ago

glennhickey commented 3 months ago

-c will remove error that happens when forwardizing a cyclic reference.

Nodes that are visited once are forwardized as usual, but with -c nodes that are visited twice or more are ignored. It would be nice to eventually forwardize this if possible (ie all steps are in the same orientation), but that seems nontrivial to support.