Open colindaven opened 4 months ago
I agree that these are useful features to add.
In the meantime, you can consider using gaffilter. It's a little specific to minigraph-cactus, but I think does some of what you want (and despite its name, works on PAF as well as GAF).
Hi @glennhickey thanks, that is useful.
I wrote something similar for gaf
filtering once and noticed it at least partially worked on PAF too.
Hi,
I couldn't find any utilities for filtering pafs and this tool seems to be the most capable and toolkit-like.
Maybe it would be an option to put in a filter to avoid users having to hack together one liners in awk, like I did here.
Filters might include
It might be easy to do this in awk, but it is a bit hacky and error prone.
Other repos do not seem to offer a paf filter either AFAIK
https://github.com/AndreaGuarracino/paf2chain
https://github.com/AndreaGuarracino/pafgnostic
https://github.com/ekg/pafplot
etc
Thanks