There was a bug where columns where both query and target were - would be converted to balanced insertion and deletion events when actually they should just be ignored.
This PR also adds the -C option to taffy view to use cs instead of cg cigar strings. This helps with debugging a bit, in that it lets you use paftools.js view -f maf to convert back from PAF to MAF.
There was a bug where columns where both query and target were
-would be converted to balanced insertion and deletion events when actually they should just be ignored.This PR also adds the
-Coption totaffy viewto usecsinstead ofcgcigar strings. This helps with debugging a bit, in that it lets you usepaftools.js view -f mafto convert back from PAF to MAF.