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Computational-Plant-Science / 3D_model_traits_demo

Computation of root phenes from 3D point clouds.
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Could not load image sample_test/slices/*.png, skipping #1

Open damizuka opened 1 year ago

damizuka commented 1 year ago

Hi! Im triying to test the program with the sample_test/test.ply file but can't make it work on mac:

python3 pipeline.py -p sample_test/ -m test.ply

Processing 3d model point cloud file 'sample_test/test.ply' ...

Skip Visualization steps...

Analyze skeleton / structure and compute traits...

results_folder: sample_test/

Analyzing 3D skeleton and structure ...

Could not load image sample_test/slices/*.png, skipping

Captura de Pantalla 2023-02-07 a la(s) 18 38 20
lsx1980 commented 1 year ago

hi damizuka,

It seems you are testing https://github.com/Computational-Plant-Science / 3D_model_traits_demo, not in this repo.

However, we can still help you. plz try again with the cmd following after you successfully set up the local environment: python3 pipeline.py -p /your path to the ply file/ -m test.ply -t 1

Your issue above was caused by the failure to generate slices from the 3D model.

Best luck!

damizuka commented 1 year ago

It works! also i have to run de procedure in a docker container , thank you !!!!! Best regards!