Open PrometheusPi opened 6 years ago
PrometheusPi
commented
6 years ago @QJohn2017 some questions regarding your setup on tinahe2:
If you could provide an example submit file, that would help a lot.
QJohn2017
commented
6 years ago @PrometheusPi
In my supercomputer center, a node has 24 cores, and i don't know the available memory on each node.
The following is one of my submit file when i use the EPOCH program on the tianhe2
#!/bin/bash echo Data | yhrun -N 4 -n 96 ./bin/epoch2d
QJohn2017
commented
6 years ago @PrometheusPi
sorry, the submit command is
#!/bin/bash
echo Data | yhrun -N 4 -n 96 ./bin/epoch2d
And other submit command is
_**#!/bin/bash**_
_**yhrun -N 4 -n 96 ../src/lapin lapin.inp**_
QJohn2017
commented
6 years ago @PrometheusPi
#!/bin/bash
yhrun -N 4 -n 96 ../src/lapin lapin.inp
QJohn2017
commented
6 years ago @PrometheusPi ,
When I use the submit commands above, one of the output file is named
slurm-4399462.out
where the number is the job ID
PrometheusPi
commented
6 years ago Do you submit these scripts via the command sbatch?
Like for example:
siom003@login3 sbatch my_submit_file.shYou do not need any specifications via bash comments as e.g.:
#SBATCH --partition=normal
#SBATCH --time=24:00:00
#SBATCH --job-name=NameOfMyJob
#SBATCH --nodes=8
#SBATCH --ntasks-per-node=1
#SBATCH --cpus-per-task=12
#SBATCH --ntasks-per-core=1
#SBATCH -o stdout
#SBATCH -e stderr
What does the help file of sbatch -h return?
PrometheusPi
commented
6 years ago @QJohn2017
Is yhrun an mpi distribution command like mpiexec, mpirun or srun?
PrometheusPi
commented
6 years ago Could you try running yhrun -N 2 -n 48 ./path_to_clara_src/executable?
QJohn2017
commented
6 years ago @PrometheusPi
How do you know the siom003@login3
siom003 is our group name in Shanghai supercomputer center
QJohn2017
commented
6 years ago @PrometheusPi ,
In tianhe2, when i create the submit file script, e.g., named test.sh. Then I submit the job by input the command
yhbatch -N 4 ./test.sh
QJohn2017
commented
6 years ago @PrometheusPi ,
The yhrun is used when I submit the job without a script .sh file.
The yhbatch is used when the submit script .sh file is used
PrometheusPi
commented
6 years ago The bash interface siom003@login3 is the interface you used in your first issue - I just copy and pasted it to the resemble a known interface in order to emphasize that the entry is intended to directly work on the command line.
However, if this is the computer system for your group, then sbatchmight not exist there - it might only be available at a login node of the super computer.
PrometheusPi
commented
6 years ago Remark for myself:
sbatch is called yhbatch
srun is called yhrun
PrometheusPi
commented
6 years ago Okay - Sorry - I got confused: The initial error message in #89 is from your Shanghai supercomputer center. The second message in #89 with the warnings is from tianhe2. Is this correct?
Then please excuse my confusion and the use of siom003@login3 - then this should be executed not in Shanghai but on tianhe2.
QJohn2017
commented
6 years ago @PrometheusPi , Yes, the initial error message in #89 is from Shanghai supercomputer center. The other error massages all come from the tianhe2.
QJohn2017
commented
6 years ago @PrometheusPi , I want to compute this program on tianhe2 firstly. When the program compute correctly on tianhe2, I will consider it on Shanghai supercomputer center
PrometheusPi
commented
6 years ago Okay - then please excuse my confusion. I thought it is the same machine but different nodes.
Than let us start with finding a setup for tianhe2 first.
I know tianhe2 has a SLURM submit system with the above mentioned renaming.
You mentioned, that you submit via yhbatch -N 4 ./test.sh.
In test.sh, do you specify anything via bash comments #SBATCH ... or #YHBATCH?
PrometheusPi
commented
6 years ago Could you copy the help of yhbatch to this issue?
(This can probably be done by yhbatch -h or yhbatch --help or man yhbatch)
I assume everything will be similar or equal to sbatch, but I don't know.
QJohn2017
commented
6 years ago @PrometheusPi ,
Just now, I submit the job by a script file named test.sh. The commands in test.sh file is
#!/bin/bash
yhrun -N 2 -n 48 executable
When I input the following commands to submit the job
yhbatch -N 2 ./test.sh
There are some errors appeared as follows
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
yhrun: error: cn10352: tasks 0-23: Exited with exit code 127@PrometheusPi ,
When I input the comand yhbatch -h, the returned results are as follows:
[ac_siom_jsliu_1@ln3%tianhe2-C src]$ yhbatch -h
Usage: sbatch [OPTIONS...] executable [args...]
Parallel run options:
-a, --array=indexes job array index values
-A, --account=name charge job to specified account
--begin=time defer job until HH:MM MM/DD/YY
-c, --cpus-per-task=ncpus number of cpus required per task
--comment=name arbitrary comment
-d, --dependency=type:jobid defer job until condition on jobid is satisfied
-D, --workdir=directory set working directory for batch script
-e, --error=err file for batch script's standard error
--export[=names] specify environment variables to export
--export-file=file|fd specify environment variables file or file descriptor to export
--get-user-env load environment from local cluster
--gid=group_id group ID to run job as (user root only)
--gres=list required generic resources
-H, --hold submit job in held state
-i, --input=in file for batch script's standard input
-I, --immediate exit if resources are not immediately available
--jobid=id run under already allocated job
-J, --job-name=jobname name of job
-k, --no-kill do not kill job on node failure
-L, --licenses=names required license, comma separated
-m, --distribution=type distribution method for processes to nodes
(type = block|cyclic|arbitrary)
-M, --clusters=names Comma separated list of clusters to issue
commands to. Default is current cluster.
Name of 'all' will submit to run on all clusters.
--mail-type=type notify on state change: BEGIN, END, FAIL or ALL
--mail-user=user who to send email notification for job state
changes
-n, --ntasks=ntasks number of tasks to run
--nice[=value] decrease scheduling priority by value
--no-requeue if set, do not permit the job to be requeued
--ntasks-per-node=n number of tasks to invoke on each node
-N, --nodes=N number of nodes on which to run (N = min[-max])
-o, --output=out file for batch script's standard output
-O, --overcommit overcommit resources
-p, --partition=partition partition requested
--profile=value enable acct_gather_profile for detailed data
value is all or none or any combination of
energy, lustre, network or task
--propagate[=rlimits] propagate all [or specific list of] rlimits
--qos=qos quality of service
-Q, --quiet quiet mode (suppress informational messages)
--requeue if set, permit the job to be requeued
-t, --time=minutes time limit
--time-min=minutes minimum time limit (if distinct)
-s, --share share nodes with other jobs
--uid=user_id user ID to run job as (user root only)
-v, --verbose verbose mode (multiple -v's increase verbosity)
--wrap[=command string] wrap commmand string in a sh script and submit
--switches=max-switches{@max-time-to-wait}
Optimum switches and max time to wait for optimum
--ignore-pbs Ignore #PBS options in the batch script
Constraint options:
--contiguous demand a contiguous range of nodes
-C, --constraint=list specify a list of constraints
-F, --nodefile=filename request a specific list of hosts
--mem=MB minimum amount of real memory
--mincpus=n minimum number of logical processors (threads) per node
--reservation=name allocate resources from named reservation
--tmp=MB minimum amount of temporary disk
-w, --nodelist=hosts... request a specific list of hosts
-x, --exclude=hosts... exclude a specific list of hosts
Consumable resources related options:
--exclusive allocate nodes in exclusive mode when
cpu consumable resource is enabled
--mem-per-cpu=MB maximum amount of real memory per allocated
cpu required by the job.
--mem >= --mem-per-cpu if --mem is specified.
Affinity/Multi-core options: (when the task/affinity plugin is enabled)
-B --extra-node-info=S[:C[:T]] Expands to:
--sockets-per-node=S number of sockets per node to allocate
--cores-per-socket=C number of cores per socket to allocate
--threads-per-core=T number of threads per core to allocate
each field can be 'min' or wildcard '*'
total cpus requested = (N x S x C x T)
--ntasks-per-core=n number of tasks to invoke on each core
--ntasks-per-socket=n number of tasks to invoke on each socket
--cpu_bind= Bind tasks to CPUs
(see "--cpu_bind=help" for options)
--hint= Bind tasks according to application hints
(see "--hint=help" for options)
--mem_bind= Bind memory to locality domains (ldom)
(see "--mem_bind=help" for options)
Help options:
-h, --help show this help message
-u, --usage display brief usage message
Other options:
-V, --version output version information and exit
[ac_siom_jsliu_1@ln3%tianhe2-C src]$Great, it looks like clara2 was put on the cluster.
But when executed, the fftw library was not found.
Could you please run ldd on executable.
In the environment you compiled clara2, all links provided by ldd should point to a know place.
What does ldd executable returns at the computer you compiled the code at?
If you add the following line to your test.sh:
#!/bin/bash
ldd executable
yhrun -N 2 -n 48 executablethe same output should appear.
However, I assume that libfftw3.so.3 will point to ==> not found.
Is this correct?
PrometheusPi
commented
6 years ago Thank you for the help file. So far, everything looks the same to sbatch.
QJohn2017
commented
6 years ago @PrometheusPi
When I input the command ldd executable, then the results are as follows:
[ac_siom_jsliu_1@ln3%tianhe2-C src]$ ldd executable
linux-vdso.so.1 => (0x00007ffffedff000)
libfftw3.so.3 => /usr/lib64/libfftw3.so.3 (0x0000003246000000)
libm.so.6 => /lib64/libm.so.6 (0x0000003246800000)
libz.so.1 => /lib64/libz.so.1 (0x0000003246c00000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003246400000)
librt.so.1 => /lib64/librt.so.1 (0x0000003247000000)
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x000000324d400000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x000000324bc00000)
libc.so.6 => /lib64/libc.so.6 (0x0000003245c00000)
/lib64/ld-linux-x86-64.so.2 (0x0000003245800000)
libdl.so.2 => /lib64/libdl.so.2 (0x00002aacd857e000)
[ac_siom_jsliu_1@ln3%tianhe2-C src]$ ^C
[ac_siom_jsliu_1@ln3%tianhe2-C src]$Great, and what does lddreturn, when executed in a submit script?
QJohn2017
commented
6 years ago When the commands in test.sh file change to
#!/bin/bash
ldd executable
yhrun -N 2 -n 48 executableThe output errors become as follows:
linux-vdso.so.1 => (0x00007fff8247e000)
libfftw3.so.3 => not found
libm.so.6 => /lib64/libm.so.6 (0x0000003921600000)
libz.so.1 => /lib64/libz.so.1 (0x0000003922600000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003922200000)
librt.so.1 => /lib64/librt.so.1 (0x0000003922a00000)
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003928200000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003924e00000)
libc.so.6 => /lib64/libc.so.6 (0x0000003921a00000)
/lib64/ld-linux-x86-64.so.2 (0x0000003921200000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003921e00000)
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
...
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
yhrun: error: cn9974: tasks 0-23: Exited with exit code 127Okay - it looks like as if your bash environment is different between the node you compiled at and the node you ran via yhbatch.
Could you please copy the output of
echo $LD_LIBRARY_PATHas returned from compile node to this issue.
And then additionally post the same result returned by yhbatch ./test.sh for the following test.sh file:
#!/bin/bash
echo $LD_LIBRARY_PATH
yhrun -N 2 -n 48 executableThere is probably some difference in the LD_LIBRARY_PATH.
QJohn2017
commented
6 years ago When i input the command echo $LD_LIBRARY_PATH, it returns:
[ac_siom_jsliu_1@ln3%tianhe2-C src]$ echo $LD_LIBRARY_PATH
/usr/local/mpi3/lib:/WORK/app/hdf5/1.8.12/02/lib:/WORK/app/intel/Compiler/11.1/059/lib/intel64:/opt/intel/Compiler/11.1/059/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/059/mkl/lib/em64t:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4
[ac_siom_jsliu_1@ln3%tianhe2-C src]$When I add the command echo $LD_LIBRARY_PATH to test.sh and submit the job, it returns:
/usr/local/mpi3/lib:/WORK/app/hdf5/1.8.12/02/lib:/WORK/app/intel/Compiler/11.1/059/lib/intel64:/opt/intel/Compiler/11.1/059/ipp/em64t/sharedlib:/opt/intel/Compiler/11.1/059/mkl/lib/em64t:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2013_sp1.2.144/mpirt/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/../compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/ipp/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/opt/intel/composer_xe_2013_sp1.2.144/compiler/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/mkl/lib/intel64:/opt/intel/composer_xe_2013_sp1.2.144/tbb/lib/intel64/gcc4.4
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
...
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
yhrun: error: cn10033: tasks 0-23: Exited with exit code 127Okay - the path is identical - that is a bit confusing.
What does on the compile node the command file /usr/lib64/libfftw3.so.3 return?
Could you try the following for the test.sh
#!/bin/bash
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/
file /usr/lib64/libfftw3.so.3
yhrun -N 2 -n 48 executableWhen input the command
file /usr/lib64/libfftw3.so.3`, it returns:
`[ac_siom_jsliu_1@ln3%tianhe2-C src]$ file /usr/lib64/libfftw3.so.3
/usr/lib64/libfftw3.so.3: symbolic link to `libfftw3.so.3.2.3'
[ac_siom_jsliu_1@ln3%tianhe2-C src]$ ^CWhen I add the command export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/ file /usr/lib64/libfftw3.so.3 to the script file test.sh, it returns:
/etc/magic, 0: Warning: using regular magic file `/usr/share/misc/magic'
file: could not find any magic files!
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
...
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
yhrun: error: cn10175: tasks 0-23: Exited with exit code 127Okay - seems like file can not find its file definitions magic on the compute node.
Okay let's try the following test.sh file:
#!/bin/bash
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/
ls -la /usr/lib64/libfftw3.so.3
ls -la /usr/lib64/
#yhrun -N 2 -n 48 executableIs the last command line #yhrun -N 2 -n 48 executable correct?
if there is a # in the first column?
QJohn2017
commented
6 years ago When I changed the commands in the file test.sh to
`#!/bin/bash
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib64/
ls -la /usr/lib64/libfftw3.so.3
ls -la /usr/lib64/
it returns as follows:
ls: cannot access /usr/lib64/libfftw3.so.3: No such file or directory
total 51368
drwxr-xr-x 21 root root 10480 Nov 30 17:22 .
drwxr-xr-x 12 root root 260 Nov 30 17:22 ..
-rw-r--r-- 1 root root 1648 May 31 2015 crt1.o
-rw-r--r-- 1 root root 1504 May 31 2015 crti.o
-rw-r--r-- 1 root root 760 May 31 2015 crtn.o
drwxr-xr-x 2 root root 80 Nov 30 17:22 gconv
drwxr-xr-x 3 root root 60 Nov 30 17:22 hal
drwxr-xr-x 3 root root 80 Nov 30 17:22 krb5
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libGL.so -> libGL.so.1.2.0
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libGL.so.1 -> libGL.so.1.2.0
-rwxr-xr-x 1 root root 504264 May 31 2015 libGL.so.1.2
-rwxr-xr-x 1 root root 391408 May 31 2015 libGL.so.1.2.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libGLU.so -> libGLU.so.1.3.1
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libGLU.so.1 -> libGLU.so.1.3.1
-rwxr-xr-x 1 root root 522976 May 31 2015 libGLU.so.1.3.1
lrwxrwxrwx 1 root root 11 Nov 30 17:22 libGLw.so -> libGLw.so.1
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libGLw.so.1 -> libGLw.so.1.0.0
-rwxr-xr-x 1 root root 25448 May 31 2015 libGLw.so.1.0.0
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libI810XvMC.so.1 -> libI810XvMC.so.1.0.0
-rwxr-xr-x 1 root root 45360 May 31 2015 libI810XvMC.so.1.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libICE.so -> libICE.so.6.3.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libICE.so.6 -> libICE.so.6.3.0
-rwxr-xr-x 1 root root 101608 May 31 2015 libICE.so.6.3.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libIDL-2.so -> libIDL-2.so.0.0.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libIDL-2.so.0 -> libIDL-2.so.0.0.0
-rwxr-xr-x 1 root root 181024 May 31 2015 libIDL-2.so.0.0.0
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libMicAccessSDK.so -> libMicAccessSDK.so.0.0.1
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libMicAccessSDK.so.0 -> libMicAccessSDK.so.0.0.1
-rwxr-xr-x 1 root root 451144 May 31 2015 libMicAccessSDK.so.0.0.1
-rwxr-xr-x 1 root root 314776 May 31 2015 libMicAccess_python.so
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libODMDebug.so -> libODMDebug.so.0.0.1
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libODMDebug.so.0 -> libODMDebug.so.0.0.1
-rwxr-xr-x 1 root root 15408 May 31 2015 libODMDebug.so.0.0.1
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libSM.so -> libSM.so.6.0.1
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libSM.so.6 -> libSM.so.6.0.1
-rwxr-xr-x 1 root root 31568 May 31 2015 libSM.so.6.0.0
-rwxr-xr-x 1 root root 34024 May 31 2015 libSM.so.6.0.1
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libSettings.so -> libSettings.so.0.0.1
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libSettings.so.0 -> libSettings.so.0.0.1
-rwxr-xr-x 1 root root 17056 May 31 2015 libSettings.so.0.0.1
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libX11.so -> libX11.so.6.3.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libX11.so.6 -> libX11.so.6.3.0
-rwxr-xr-x 1 root root 1300376 May 31 2015 libX11.so.6.3.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libXau.so -> libXau.so.6.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libXau.so.6 -> libXau.so.6.0.0
-rwxr-xr-x 1 root root 13168 May 31 2015 libXau.so.6.0.0
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libXext.so -> libXext.so.6.4.0
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libXext.so.6 -> libXext.so.6.4.0
-rwxr-xr-x 1 root root 80944 May 31 2015 libXext.so.6.4.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libXrender.so -> libXrender.so.1.3.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libXrender.so.1 -> libXrender.so.1.3.0
-rwxr-xr-x 1 root root 42472 May 31 2015 libXrender.so.1.3.0
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libart_lgpl_2.so -> libart_lgpl_2.so.2.3.20
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libart_lgpl_2.so.2 -> libart_lgpl_2.so.2.3.20
-rwxr-xr-x 1 root root 104960 May 31 2015 libart_lgpl_2.so.2.3.20
-rwxr-xr-x 1 root root 829 May 31 2015 libartsc.la
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libartsc.so.0 -> libartsc.so.0.0.0
-rwxr-xr-x 1 root root 24472 May 31 2015 libartsc.so.0.0.0
-rwxr-xr-x 1 root root 1016 May 31 2015 libartscbackend.la
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libartscbackend.so.0 -> libartscbackend.so.0.0.0
-rwxr-xr-x 1 root root 100072 May 31 2015 libartscbackend.so.0.0.0
-rwxr-xr-x 1 root root 843 May 31 2015 libartsdsp.la
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libartsdsp.so.0 -> libartsdsp.so.0.0.0
-rwxr-xr-x 1 root root 13208 May 31 2015 libartsdsp.so.0.0.0
-rwxr-xr-x 1 root root 850 May 31 2015 libartsdsp_st.la
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libartsdsp_st.so.0 -> libartsdsp_st.so.0.0.0
-rwxr-xr-x 1 root root 32960 May 31 2015 libartsdsp_st.so.0.0.0
-rwxr-xr-x 1 root root 903 May 31 2015 libartsflow.la
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libartsflow.so.1 -> libartsflow.so.1.0.0
-rwxr-xr-x 1 root root 1689768 May 31 2015 libartsflow.so.1.0.0
-rwxr-xr-x 1 root root 891 May 31 2015 libartsflow_idl.la
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libartsflow_idl.so.1 -> libartsflow_idl.so.1.0.0
-rwxr-xr-x 1 root root 1211480 May 31 2015 libartsflow_idl.so.1.0.0
-rwxr-xr-x 1 root root 1046 May 31 2015 libartsgslplayobject.la
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libartsgslplayobject.so.0 -> libartsgslplayobject.so.0.0.0
-rwxr-xr-x 1 root root 92712 May 31 2015 libartsgslplayobject.so.0.0.0
-rwxr-xr-x 1 root root 1246 May 31 2015 libartskde.la
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libartskde.so.1 -> libartskde.so.1.2.0
-rwxr-xr-x 1 root root 553872 May 31 2015 libartskde.so.1.2.0
-rwxr-xr-x 1 root root 1046 May 31 2015 libartswavplayobject.la
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libartswavplayobject.so.0 -> libartswavplayobject.so.0.0.0
-rwxr-xr-x 1 root root 69744 May 31 2015 libartswavplayobject.so.0.0.0
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libatk-1.0.so -> libatk-1.0.so.0.3009.1
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libatk-1.0.so.0 -> libatk-1.0.so.0.3009.1
-rwxr-xr-x 1 root root 136224 May 31 2015 libatk-1.0.so.0.3009.1
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libatkmm-1.6.so.1 -> libatkmm-1.6.so.1.1.0
-rwxr-xr-x 1 root root 311488 May 31 2015 libatkmm-1.6.so.1.1.0
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libaudiofile.so.0 -> libaudiofile.so.0.0.2
-rwxr-xr-x 1 root root 169464 May 31 2015 libaudiofile.so.0.0.2
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libbz2.so -> ../../lib64/libbz2.so.1
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libcairo.so -> libcairo.so.2.10800.8
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libcairo.so.2 -> libcairo.so.2.10800.8
-rwxr-xr-x 1 root root 497408 May 31 2015 libcairo.so.2.10800.8
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libcairomm-1.0.so.1 -> libcairomm-1.0.so.1.3.0
-rwxr-xr-x 1 root root 129192 May 31 2015 libcairomm-1.0.so.1.3.0
-rw-r--r-- 1 root root 58948 May 31 2015 libcfsutil.a
-rwxr-xr-x 1 root root 1972510 May 31 2015 libcoi_common.a
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libcoi_host.so -> libcoi_host.so.0
-rwxr-xr-x 1 root root 421248 May 31 2015 libcoi_host.so.0
-rwxr-xr-x 1 root root 99512 May 31 2015 libcoitracelib.so.0
-rw-r--r-- 1 root root 17728 May 31 2015 libcom_err.a
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libcom_err.so -> /lib64/libcom_err.so.2
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libcrack.so.2 -> libcrack.so.2.8.1
-rwxr-xr-x 1 root root 41088 May 31 2015 libcrack.so.2.8.1
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libcroco-0.6.so -> libcroco-0.6.so.3.0.1
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libcroco-0.6.so.3 -> libcroco-0.6.so.3.0.1
-rwxr-xr-x 1 root root 251576 May 31 2015 libcroco-0.6.so.3.0.1
lrwxrwxrwx 1 root root 25 Nov 30 17:22 libcrypt.so -> ../../lib64/libcrypt.so.1
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libcrypto.so -> libcrypto.so.1.0.1e
-rwxr-xr-x 1 root root 1408384 May 31 2015 libcrypto.so.0.9.8e
-rwxr-xr-x 1 root root 1949440 May 31 2015 libcrypto.so.1.0.1e
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libcrypto.so.10 -> libcrypto.so.1.0.1e
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libcrypto.so.6 -> libcrypto.so.0.9.8e
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libcryptui.so.0 -> libcryptui.so.0.0.0
-rwxr-xr-x 1 root root 74424 May 31 2015 libcryptui.so.0.0.0
-rwxr-xr-x 1 root root 326960 May 31 2015 libcups.so.2
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libcupsimage.so -> libcupsimage.so.2
-rwxr-xr-x 1 root root 105376 May 31 2015 libcupsimage.so.2
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libcurl.so -> libcurl.so.4.1.1
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libcurl.so.4 -> libcurl.so.4.1.1
-rwxr-xr-x 1 root root 346008 May 31 2015 libcurl.so.4.1.1
-rw-r--r-- 1 root root 17 May 31 2015 libcurses.so
-rw-r--r-- 1 root root 18 May 31 2015 libcursesw.so
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libdaemon.so.0 -> libdaemon.so.0.5.0
-rwxr-xr-x 1 root root 27368 May 31 2015 libdaemon.so.0.5.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libdaplcma.so -> libdaplcma.so.1.0.2
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libdaplcma.so.1 -> libdaplcma.so.1.0.2
-rwxr-xr-x 1 root root 102744 May 31 2015 libdaplcma.so.1.0.2
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libdaplofa.so -> libdaplofa.so.2.0.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libdaplofa.so.2 -> libdaplofa.so.2.0.0
-rwxr-xr-x 1 root root 115504 May 31 2015 libdaplofa.so.2.0.0
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libdaploscm.so -> libdaploscm.so.2.0.0
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libdaploscm.so.2 -> libdaploscm.so.2.0.0
-rwxr-xr-x 1 root root 123360 May 31 2015 libdaploscm.so.2.0.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libdaplscm.so -> libdaplscm.so.1.0.2
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libdaplscm.so.1 -> libdaplscm.so.1.0.2
-rwxr-xr-x 1 root root 102712 May 31 2015 libdaplscm.so.1.0.2
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libdat.so -> libdat.so.1.0.2
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libdat.so.1 -> libdat.so.1.0.2
-rwxr-xr-x 1 root root 37352 May 31 2015 libdat.so.1.0.2
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libdat2.so -> libdat2.so.2.0.0
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libdat2.so.2 -> libdat2.so.2.0.0
-rwxr-xr-x 1 root root 39968 May 31 2015 libdat2.so.2.0.0
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libdb-4.7.so -> ../../lib64/libdb-4.7.so
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libdb.so -> ../../lib64/libdb-4.7.so
-rwxr-xr-x 1 root root 1645008 May 31 2015 libdb_cxx-4.7.so
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libdb_cxx.so -> libdb_cxx-4.7.so
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libdbi.so.0 -> libdbi.so.0.0.5
-rwxr-xr-x 1 root root 57272 May 31 2015 libdbi.so.0.0.5
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libdbus-c++-1.so.0 -> libdbus-c++-1.so.0.0.0
-rwxr-xr-x 1 root root 192632 May 31 2015 libdbus-c++-1.so.0.0.0
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libdbus-glib-1.so -> libdbus-glib-1.so.2.1.0
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libdbus-glib-1.so.2 -> libdbus-glib-1.so.2.1.0
-rwxr-xr-x 1 root root 144912 May 31 2015 libdbus-glib-1.so.2.1.0
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libdbus-qt-1.so.1 -> libdbus-qt-1.so.1.0.0
-rwxr-xr-x 1 root root 68464 May 31 2015 libdbus-qt-1.so.1.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libdmx.so.1 -> libdmx.so.1.0.0
-rwxr-xr-x 1 root root 18256 May 31 2015 libdmx.so.1.0.0
-rw-r--r-- 1 root root 61536 May 31 2015 libe2p.a
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libe2p.so -> /lib64/libe2p.so.2
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libedit.so.0 -> libedit.so.0.0.27
-rwxr-xr-x 1 root root 181296 May 31 2015 libedit.so.0.0.27
-rwxr-xr-x 1 root root 86976 May 31 2015 libelf-0.152.so
lrwxrwxrwx 1 root root 11 Nov 30 17:22 libelf.so -> libelf.so.1
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libelf.so.1 -> libelf-0.152.so
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libesmtp.so.5 -> libesmtp.so.5.1.5
-rwxr-xr-x 1 root root 83208 May 31 2015 libesmtp.so.5.1.5
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libesoobS.so -> libesoobS.so.2.0.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libesoobS.so.2 -> libesoobS.so.2.0.0
-rwxr-xr-x 1 root root 7416 May 31 2015 libesoobS.so.2.0.0
-rwxr-xr-x 1 root root 2434672 May 31 2015 libestbase.so.1.2.96.1
-rwxr-xr-x 1 root root 917232 May 31 2015 libestools.so.1.2.96.1
-rwxr-xr-x 1 root root 61888 May 31 2015 libeststring.so.1.2
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libevent-1.4.so.2 -> libevent-1.4.so.2.1.3
-rwxr-xr-x 1 root root 109168 May 31 2015 libevent-1.4.so.2.1.3
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libexslt.so -> libexslt.so.0.8.15
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libexslt.so.0 -> libexslt.so.0.8.15
-rwxr-xr-x 1 root root 84296 May 31 2015 libexslt.so.0.8.15
-rw-r--r-- 1 root root 471012 May 31 2015 libext2fs.a
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libext2fs.so -> /lib64/libext2fs.so.2
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libfam.so -> libfam.so.0.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libfam.so.0 -> libfam.so.0.0.0
-rwxr-xr-x 1 root root 32472 May 31 2015 libfam.so.0.0.0
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libfontconfig.so -> libfontconfig.so.1.4.4
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libfontconfig.so.1 -> libfontconfig.so.1.4.4
-rwxr-xr-x 1 root root 223040 May 31 2015 libfontconfig.so.1.4.4
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libfontenc.so.1 -> libfontenc.so.1.0.0
-rwxr-xr-x 1 root root 30024 May 31 2015 libfontenc.so.1.0.0
lrwxrwxrwx 1 root root 12 Nov 30 17:22 libform.so -> libform.so.5
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libform.so.5 -> libform.so.5.7
-rwxr-xr-x 1 root root 63072 May 31 2015 libform.so.5.7
lrwxrwxrwx 1 root root 13 Nov 30 17:22 libformw.so -> libformw.so.5
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libformw.so.5 -> libformw.so.5.7
-rwxr-xr-x 1 root root 69816 May 31 2015 libformw.so.5.7
-rw-r--r-- 1 root root 54674 May 31 2015 libfreebl.a
lrwxrwxrwx 1 root root 26 Nov 30 17:22 libfreebl3.chk -> ../../lib64/libfreebl3.chk
lrwxrwxrwx 1 root root 25 Nov 30 17:22 libfreebl3.so -> ../../lib64/libfreebl3.so
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libfreetype.so -> libfreetype.so.6.3.22
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libfreetype.so.6 -> libfreetype.so.6.3.22
-rwxr-xr-x 1 root root 644912 May 31 2015 libfreetype.so.6.3.22
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libgamin-1.so -> libgamin-1.so.0.1.10
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libgamin-1.so.0 -> libgamin-1.so.0.1.10
-rwxr-xr-x 1 root root 30096 May 31 2015 libgamin-1.so.0.1.10
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libgc.so.1 -> libgc.so.1.0.3
-rwxr-xr-x 1 root root 161640 May 31 2015 libgc.so.1.0.3
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libgccpp.so.1 -> libgccpp.so.1.0.3
-rwxr-xr-x 1 root root 4672 May 31 2015 libgccpp.so.1.0.3
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libgconf-2.so -> libgconf-2.so.4.1.5
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libgconf-2.so.4 -> libgconf-2.so.4.1.5
-rwxr-xr-x 1 root root 261456 May 31 2015 libgconf-2.so.4.1.5
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libgconfmm-2.6.so.1 -> libgconfmm-2.6.so.1.0.6
-rwxr-xr-x 1 root root 75184 May 31 2015 libgconfmm-2.6.so.1.0.6
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libgcr.so -> libgcr.so.0.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libgcr.so.0 -> libgcr.so.0.0.0
-rwxr-xr-x 1 root root 282984 May 31 2015 libgcr.so.0.0.0
lrwxrwxrwx 1 root root 31 Nov 30 17:22 libgcrypt.so -> ../../lib64/libgcrypt.so.11.5.3
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libgdbm.so.2 -> libgdbm.so.2.0.0
-rwxr-xr-x 1 root root 28304 May 31 2015 libgdbm.so.2.0.0
lrwxrwxrwx 1 root root 26 Nov 30 17:22 libgdk-x11-2.0.so -> libgdk-x11-2.0.so.0.2000.1
lrwxrwxrwx 1 root root 26 Nov 30 17:22 libgdk-x11-2.0.so.0 -> libgdk-x11-2.0.so.0.2000.1
-rwxr-xr-x 1 root root 770112 May 31 2015 libgdk-x11-2.0.so.0.2000.1
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libgdk_pixbuf-2.0.so -> libgdk_pixbuf-2.0.so.0.2000.1
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libgdk_pixbuf-2.0.so.0 -> libgdk_pixbuf-2.0.so.0.2000.1
-rwxr-xr-x 1 root root 130488 May 31 2015 libgdk_pixbuf-2.0.so.0.2000.1
lrwxrwxrwx 1 root root 34 Nov 30 17:22 libgdk_pixbuf_xlib-2.0.so -> libgdk_pixbuf_xlib-2.0.so.0.2000.1
lrwxrwxrwx 1 root root 34 Nov 30 17:22 libgdk_pixbuf_xlib-2.0.so.0 -> libgdk_pixbuf_xlib-2.0.so.0.2000.1
-rwxr-xr-x 1 root root 66976 May 31 2015 libgdk_pixbuf_xlib-2.0.so.0.2000.1
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libgdkmm-2.4.so.1 -> libgdkmm-2.4.so.1.1.0
-rwxr-xr-x 1 root root 308208 May 31 2015 libgdkmm-2.4.so.1.1.0
drwxr-xr-x 3 root root 60 Nov 30 17:22 libglade
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libglade-2.0.so -> libglade-2.0.so.0.0.7
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libglade-2.0.so.0 -> libglade-2.0.so.0.0.7
-rwxr-xr-x 1 root root 103664 May 31 2015 libglade-2.0.so.0.0.7
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libgladeui-1.so.9 -> libgladeui-1.so.9.0.3
-rwxr-xr-x 1 root root 645960 May 31 2015 libgladeui-1.so.9.0.3
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libgmp.so -> libgmp.so.3.5.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libgmp.so.3 -> libgmp.so.3.5.0
-rwxr-xr-x 1 root root 376792 May 31 2015 libgmp.so.3.5.0
lrwxrwxrwx 1 root root 33 Nov 30 17:22 libgpg-error.so -> ../../lib64/libgpg-error.so.0.5.0
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libhal-storage.so -> libhal-storage.so.1.0.0
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libhal-storage.so.1 -> libhal-storage.so.1.0.0
-rwxr-xr-x 1 root root 44256 May 31 2015 libhal-storage.so.1.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libhal.so.1 -> libhal.so.1.0.0
-rwxr-xr-x 1 root root 68928 May 31 2015 libhal.so.1.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libhistory.so -> libhistory.so.6
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libhistory.so.5 -> libhistory.so.5.2
-rwxr-xr-x 1 root root 33360 May 31 2015 libhistory.so.5.2
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libhistory.so.6 -> libhistory.so.6.0
-rwxr-xr-x 1 root root 36000 May 31 2015 libhistory.so.6.0
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libhstreams_source.so -> libhstreams_source.so.0
-rwxr-xr-x 1 root root 163048 May 31 2015 libhstreams_source.so.0
-rwxr-xr-x 1 root root 62056 May 31 2015 libhugetlbfs.so
-rwxr-xr-x 1 root root 928 May 31 2015 libhwloc.la
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libhwloc.so -> libhwloc.so.5.1.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libhwloc.so.1 -> libhwloc.so.1.0.1
-rwxr-xr-x 1 root root 108032 May 31 2015 libhwloc.so.1.0.1
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libhwloc.so.5 -> libhwloc.so.5.1.0
-rwxr-xr-x 1 root root 159904 May 31 2015 libhwloc.so.5.1.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libibmad.so.5 -> libibmad.so.5.3.1
-rwxr-xr-x 1 root root 76128 May 31 2015 libibmad.so.5.1.2
-rwxr-xr-x 1 root root 105248 May 31 2015 libibmad.so.5.3.1
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libibumad.so -> libibumad.so.3.0.3
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libibumad.so.2 -> libibumad.so.2.0.1
-rwxr-xr-x 1 root root 25600 May 31 2015 libibumad.so.2.0.1
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libibumad.so.3 -> libibumad.so.3.0.3
-rwxr-xr-x 1 root root 28160 May 31 2015 libibumad.so.3.0.3
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libibverbs.so -> libibverbs.so.1.0.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libibverbs.so.1 -> libibverbs.so.1.0.0
-rwxr-xr-x 1 root root 57240 May 31 2015 libibverbs.so.1.0.0
lrwxrwxrwx 1 root root 28 Nov 30 17:22 libidn.so -> ../../lib64/libidn.so.11.6.1
-rwxr-xr-x 1 root root 22120 May 31 2015 libijs-0.35.so
-rwxr-xr-x 1 root root 1141460 May 31 2015 libiomp5.so
-rwxr-xr-x 1 root root 47244 May 31 2015 libiompstubs5.so
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libjpeg.so -> libjpeg.so.62.0.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libjpeg.so.62 -> libjpeg.so.62.0.0
-rwxr-xr-x 1 root root 265280 May 31 2015 libjpeg.so.62.0.0
lrwxrwxrwx 1 root root 30 Nov 30 17:22 libk5crypto.so -> ../../lib64/libk5crypto.so.3.1
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libkadm5clnt.so -> libkadm5clnt_mit.so
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libkadm5clnt_mit.so -> libkadm5clnt_mit.so.8.0
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libkadm5clnt_mit.so.8 -> libkadm5clnt_mit.so.8.0
-rwxr-xr-x 1 root root 89216 May 31 2015 libkadm5clnt_mit.so.8.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libkadm5srv.so -> libkadm5srv_mit.so
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libkadm5srv_mit.so -> libkadm5srv_mit.so.8.0
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libkadm5srv_mit.so.8 -> libkadm5srv_mit.so.8.0
-rwxr-xr-x 1 root root 122640 May 31 2015 libkadm5srv_mit.so.8.0
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libkdb5.so -> libkdb5.so.6.0
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libkdb5.so.5 -> libkdb5.so.5.0
-rwxr-xr-x 1 root root 72888 May 31 2015 libkdb5.so.5.0
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libkdb5.so.6 -> libkdb5.so.6.0
-rwxr-xr-x 1 root root 79976 May 31 2015 libkdb5.so.6.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libkdb_ldap.so -> libkdb_ldap.so.1.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libkdb_ldap.so.1 -> libkdb_ldap.so.1.0
-rwxr-xr-x 1 root root 102096 May 31 2015 libkdb_ldap.so.1.0
lrwxrwxrwx 1 root root 26 Nov 30 17:22 libkrb5.so -> ../../lib64/libkrb5.so.3.3
lrwxrwxrwx 1 root root 33 Nov 30 17:22 libkrb5support.so -> ../../lib64/libkrb5support.so.0.1
lrwxrwxrwx 1 root root 21 Nov 30 17:22 liblber-2.3.so.0 -> liblber-2.3.so.0.2.31
-rwxr-xr-x 1 root root 57600 May 31 2015 liblber-2.3.so.0.2.31
lrwxrwxrwx 1 root root 10 Nov 30 17:22 liblber-2.4.so.2 -> liblber.so
lrwxrwxrwx 1 root root 27 Nov 30 17:22 liblber.so -> /lib64/liblber-2.4.so.2.5.6
lrwxrwxrwx 1 root root 17 Nov 30 17:22 liblcms.so.1 -> liblcms.so.1.0.19
-rwxr-xr-x 1 root root 226552 May 31 2015 liblcms.so.1.0.19
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libldap-2.3.so.0 -> libldap-2.3.so.0.2.31
-rwxr-xr-x 1 root root 247584 May 31 2015 libldap-2.3.so.0.2.31
lrwxrwxrwx 1 root root 10 Nov 30 17:22 libldap-2.4.so.2 -> libldap.so
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libldap.so -> /lib64/libldap-2.4.so.2.5.6
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libldap_r-2.3.so.0 -> libldap_r-2.3.so.0.2.31
-rwxr-xr-x 1 root root 268128 May 31 2015 libldap_r-2.3.so.0.2.31
lrwxrwxrwx 1 root root 12 Nov 30 17:22 libldap_r-2.4.so.2 -> libldap_r.so
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libldap_r.so -> /lib64/libldap_r-2.4.so.2.5.6
-rwxr-xr-x 1 root root 186296 May 31 2015 liblua-5.1.so
-rw-r--r-- 1 root root 336852 May 31 2015 liblustreapi.a
-rwxr-xr-x 1 root root 282544 May 31 2015 liblustreapi.so
lrwxrwxrwx 1 root root 16 Nov 30 17:22 liblzma.so -> liblzma.so.0.0.0
lrwxrwxrwx 1 root root 16 Nov 30 17:22 liblzma.so.0 -> liblzma.so.0.0.0
-rwxr-xr-x 1 root root 137264 May 31 2015 liblzma.so.0.0.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libmagic.so -> libmagic.so.1.0.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libmagic.so.1 -> libmagic.so.1.0.0
-rwxr-xr-x 1 root root 118112 May 31 2015 libmagic.so.1.0.0
lrwxrwxrwx 1 root root 12 Nov 30 17:22 libmenu.so -> libmenu.so.5
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libmenu.so.5 -> libmenu.so.5.7
-rwxr-xr-x 1 root root 29656 May 31 2015 libmenu.so.5.7
lrwxrwxrwx 1 root root 13 Nov 30 17:22 libmenuw.so -> libmenuw.so.5
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libmenuw.so.5 -> libmenuw.so.5.7
-rwxr-xr-x 1 root root 32936 May 31 2015 libmenuw.so.5.7
lrwxrwxrwx 1 root root 28 Nov 30 17:22 libmetacity-private.so.0 -> libmetacity-private.so.0.0.0
-rwxr-xr-x 1 root root 165928 May 31 2015 libmetacity-private.so.0.0.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libmicmgmt.so -> libmicmgmt.so.0.0.2
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libmicmgmt.so.0 -> libmicmgmt.so.0.0.2
-rwxr-xr-x 1 root root 153296 May 31 2015 libmicmgmt.so.0.0.2
-rwxr-xr-x 1 root root 26432 May 31 2015 libmlx4-rdmav2.so
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libmpssconfig.so -> libmpssconfig.so.0.0.1
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libmpssconfig.so.0 -> libmpssconfig.so.0.0.1
-rwxr-xr-x 1 root root 63096 May 31 2015 libmpssconfig.so.0.0.1
-rwxr-xr-x 1 root root 32040 May 31 2015 libmthca-rdmav2.so
lrwxrwxrwx 1 root root 13 Nov 30 17:22 libmunge -> libmunge.so.2
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libmunge.so.2 -> libmunge.so.2.0.0
-rwxr-xr-x 1 root root 38872 May 31 2015 libmunge.so.2.0.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libmyo-client.so -> libmyo-client.so.0
-rw-r--r-- 1 root root 236663 May 31 2015 libmyo-client.so.0
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libmyodbl-client.so -> libmyodbl-client.so.0
-rw-r--r-- 1 root root 8509 May 31 2015 libmyodbl-client.so.0
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libncurses.so -> ../../lib64/libncurses.so.5
lrwxrwxrwx 1 root root 28 Nov 30 17:22 libncursesw.so -> ../../lib64/libncursesw.so.5
drwxr-xr-x 2 root root 100 Nov 30 17:22 libnfsidmap
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libnfsidmap.so.0 -> libnfsidmap.so.0.3.0
-rwxr-xr-x 1 root root 27520 May 31 2015 libnfsidmap.so.0.3.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libnotify.so -> libnotify.so.1.2.3
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libnotify.so.1 -> libnotify.so.1.2.3
-rwxr-xr-x 1 root root 40272 May 31 2015 libnotify.so.1.2.3
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libnspr4.so -> ../../lib64/libnspr4.so
-rwxr-xr-x 1 root root 1299096 May 31 2015 libnss3.so
lrwxrwxrwx 1 root root 38 Nov 30 17:22 libnssckbi.so -> /etc/alternatives/libnssckbi.so.x86_64
-rwxr-xr-x 1 root root 182112 May 31 2015 libnssutil3.so
lrwxrwxrwx 1 root root 12 Nov 30 17:22 libnuma.so -> libnuma.so.1
-rwxr-xr-x 1 root root 38872 May 31 2015 libnuma.so.1
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libogg.so.0 -> libogg.so.0.6.0
-rwxr-xr-x 1 root root 25520 May 31 2015 libogg.so.0.6.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libopensm.so -> libopensm.so.4.0.2
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libopensm.so.2 -> libopensm.so.2.1.5
-rwxr-xr-x 1 root root 66608 May 31 2015 libopensm.so.2.1.5
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libopensm.so.4 -> libopensm.so.4.0.2
-rwxr-xr-x 1 root root 68672 May 31 2015 libopensm.so.4.0.2
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libopensm.so.5 -> libopensm.so.5.1.0
-rwxr-xr-x 1 root root 87536 May 31 2015 libopensm.so.5.1.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libosmcomp.so -> libosmcomp.so.3.0.4
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libosmcomp.so.3 -> libosmcomp.so.3.0.6
-rwxr-xr-x 1 root root 54400 May 31 2015 libosmcomp.so.3.0.4
-rwxr-xr-x 1 root root 57040 May 31 2015 libosmcomp.so.3.0.6
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libosmvendor.so -> libosmvendor.so.3.0.5
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libosmvendor.so.3 -> libosmvendor.so.3.0.8
-rwxr-xr-x 1 root root 28912 May 31 2015 libosmvendor.so.3.0.5
-rwxr-xr-x 1 root root 33000 May 31 2015 libosmvendor.so.3.0.8
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libpanel-applet-2.so.0 -> libpanel-applet-2.so.0.2.68
-rwxr-xr-x 1 root root 63064 May 31 2015 libpanel-applet-2.so.0.2.68
lrwxrwxrwx 1 root root 13 Nov 30 17:22 libpanel.so -> libpanel.so.5
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libpanel.so.5 -> libpanel.so.5.7
-rwxr-xr-x 1 root root 14024 May 31 2015 libpanel.so.5.7
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libpanelappletmm-2.6.so.1 -> libpanelappletmm-2.6.so.1.0.1
-rwxr-xr-x 1 root root 66000 May 31 2015 libpanelappletmm-2.6.so.1.0.1
lrwxrwxrwx 1 root root 14 Nov 30 17:22 libpanelw.so -> libpanelw.so.5
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libpanelw.so.5 -> libpanelw.so.5.7
-rwxr-xr-x 1 root root 14032 May 31 2015 libpanelw.so.5.7
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libpango-1.0.so -> libpango-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libpango-1.0.so.0 -> libpango-1.0.so.0.2800.1
-rwxr-xr-x 1 root root 310240 May 31 2015 libpango-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libpangocairo-1.0.so -> libpangocairo-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 29 Nov 30 17:22 libpangocairo-1.0.so.0 -> libpangocairo-1.0.so.0.2800.1
-rwxr-xr-x 1 root root 52144 May 31 2015 libpangocairo-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libpangoft2-1.0.so -> libpangoft2-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libpangoft2-1.0.so.0 -> libpangoft2-1.0.so.0.2800.1
-rwxr-xr-x 1 root root 176240 May 31 2015 libpangoft2-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libpangomm-1.4.so.1 -> libpangomm-1.4.so.1.0.30
-rwxr-xr-x 1 root root 187816 May 31 2015 libpangomm-1.4.so.1.0.30
lrwxrwxrwx 1 root root 25 Nov 30 17:22 libpangox-1.0.so -> libpangox-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 25 Nov 30 17:22 libpangox-1.0.so.0 -> libpangox-1.0.so.0.2800.1
-rwxr-xr-x 1 root root 53376 May 31 2015 libpangox-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libpangoxft-1.0.so -> libpangoxft-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libpangoxft-1.0.so.0 -> libpangoxft-1.0.so.0.2800.1
-rwxr-xr-x 1 root root 35104 May 31 2015 libpangoxft-1.0.so.0.2800.1
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libpcrecpp.so -> libpcrecpp.so.0.0.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libpcrecpp.so.0 -> libpcrecpp.so.0.0.0
-rwxr-xr-x 1 root root 33088 May 31 2015 libpcrecpp.so.0.0.0
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libpcreposix.so -> libpcreposix.so.0.0.0
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libpcreposix.so.0 -> libpcreposix.so.0.0.0
-rwxr-xr-x 1 root root 9656 May 31 2015 libpcreposix.so.0.0.0
lrwxrwxrwx 1 root root 22 Nov 30 17:22 libplc4.so -> ../../lib64/libplc4.so
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libplds4.so -> ../../lib64/libplds4.so
-rwxr-xr-x 1 root root 977 May 31 2015 libpmi.la
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libpmi.so -> libpmi.so.0.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libpmi.so.0 -> libpmi.so.0.0.0
-rwxr-xr-x 1 root root 56452 May 31 2015 libpmi.so.0.0.0
-rwxr-xr-x 1 root root 946 May 31 2015 libpmi2.la
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libpmi2.so -> libpmi2.so.0.0.0
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libpmi2.so.0 -> libpmi2.so.0.0.0
-rwxr-xr-x 1 root root 117964 May 31 2015 libpmi2.so.0.0.0
lrwxrwxrwx 1 root root 11 Nov 30 17:22 libpng.so -> libpng12.so
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libpng.so.3 -> libpng.so.3.49.0
-rwxr-xr-x 1 root root 168616 May 31 2015 libpng.so.3.49.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libpng12.so -> libpng12.so.0.49.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libpng12.so.0 -> libpng12.so.0.49.0
-rwxr-xr-x 1 root root 157960 May 31 2015 libpng12.so.0.49.0
lrwxrwxrwx 1 root root 28 Nov 30 17:22 libpopt.so -> ../../lib64/libpopt.so.0.0.0
-rw-r--r-- 1 root root 70402 May 31 2015 libptlctl.a
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libpython2.6.so -> libpython2.6.so.1.0
-r-xr-xr-x 1 root root 1672576 May 31 2015 libpython2.6.so.1.0
-rw-r--r-- 1 root root 50894 May 31 2015 libquota.a
lrwxrwxrwx 1 root root 18 Nov 30 17:22 librdmacm.so -> librdmacm.so.1.0.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 librdmacm.so.1 -> librdmacm.so.1.0.0
-rwxr-xr-x 1 root root 80656 May 31 2015 librdmacm.so.1.0.0
lrwxrwxrwx 1 root root 28 Nov 30 17:22 libreadline.so -> ../../lib64/libreadline.so.6
lrwxrwxrwx 1 root root 15 Nov 30 17:22 librpm.so -> librpm.so.1.0.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 librpm.so.1 -> librpm.so.1.0.0
-rwxr-xr-x 1 root root 436736 May 31 2015 librpm.so.1.0.0
lrwxrwxrwx 1 root root 20 Nov 30 17:22 librpmbuild.so -> librpmbuild.so.1.0.0
lrwxrwxrwx 1 root root 20 Nov 30 17:22 librpmbuild.so.1 -> librpmbuild.so.1.0.0
-rwxr-xr-x 1 root root 158472 May 31 2015 librpmbuild.so.1.0.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 librpmio.so -> librpmio.so.1.0.0
lrwxrwxrwx 1 root root 17 Nov 30 17:22 librpmio.so.1 -> librpmio.so.1.0.0
-rwxr-xr-x 1 root root 186920 May 31 2015 librpmio.so.1.0.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 librsvg-2.so -> librsvg-2.so.2.26.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 librsvg-2.so.2 -> librsvg-2.so.2.26.0
-rwxr-xr-x 1 root root 229088 May 31 2015 librsvg-2.so.2.26.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libsasl2.so -> libsasl2.so.2.0.23
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libsasl2.so.2 -> libsasl2.so.2.0.23
-rwxr-xr-x 1 root root 108728 May 31 2015 libsasl2.so.2.0.23
lrwxrwxrwx 1 root root 23 Nov 30 17:22 libsaslwrapper.so.1 -> libsaslwrapper.so.1.0.0
-rwxr-xr-x 1 root root 26016 May 31 2015 libsaslwrapper.so.1.0.0
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libscif.so -> libscif.so.0.0.1
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libscif.so.0 -> libscif.so.0.0.1
-rwxr-xr-x 1 root root 7800 May 31 2015 libscif.so.0.0.1
lrwxrwxrwx 1 root root 27 Nov 30 17:22 libselinux.so -> ../../lib64/libselinux.so.1
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libslurm.so -> libslurm.so.26.0.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libslurm.so.26 -> libslurm.so.26.0.0
-rwxr-xr-x 1 root root 3922252 May 31 2015 libslurm.so.26.0.0
-rwxr-xr-x 1 root root 183928 May 31 2015 libsmime3.so
-rw-r--r-- 1 root root 899 May 31 2015 libsoftokn3.chk
-rwxr-xr-x 1 root root 273128 May 31 2015 libsoftokn3.so
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libsqlite3.so -> libsqlite3.so.0.8.6
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libsqlite3.so.0 -> libsqlite3.so.0.8.6
-rwxr-xr-x 1 root root 586592 May 31 2015 libsqlite3.so.0.8.6
-rw-r--r-- 1 root root 46778 May 31 2015 libss.a
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libssl.so -> libssl.so.1.0.1e
-rwxr-xr-x 1 root root 321224 May 31 2015 libssl.so.0.9.8e
-rwxr-xr-x 1 root root 439912 May 31 2015 libssl.so.1.0.1e
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libssl.so.10 -> libssl.so.1.0.1e
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libssl.so.6 -> libssl.so.0.9.8e
-rwxr-xr-x 1 root root 249368 May 31 2015 libssl3.so
lrwxrwxrwx 1 root root 34 Nov 30 17:22 libstartup-notification-1.so -> libstartup-notification-1.so.0.0.0
lrwxrwxrwx 1 root root 34 Nov 30 17:22 libstartup-notification-1.so.0 -> libstartup-notification-1.so.0.0.0
-rwxr-xr-x 1 root root 39736 May 31 2015 libstartup-notification-1.so.0.0.0
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libstdc++.so.5 -> libstdc++.so.5.0.7
-rwxr-xr-x 1 root root 825480 May 31 2015 libstdc++.so.5.0.7
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libstdc++.so.6 -> libstdc++.so.6.0.13
-rwxr-xr-x 1 root root 989840 May 31 2015 libstdc++.so.6.0.13
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libsysfs.so.2 -> libsysfs.so.2.0.1
-rwxr-xr-x 1 root root 47336 May 31 2015 libsysfs.so.2.0.1
lrwxrwxrwx 1 root root 24 Nov 30 17:22 libsysfswrapper.so.0 -> libsysfswrapper.so.0.0.0
-rwxr-xr-x 1 root root 8648 May 31 2015 libsysfswrapper.so.0.0.0
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libtiff.so -> libtiff.so.3.9.4
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libtiff.so.3 -> libtiff.so.3.9.4
-rwxr-xr-x 1 root root 411232 May 31 2015 libtiff.so.3.9.4
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libtiffxx.so -> libtiffxx.so.3.9.4
lrwxrwxrwx 1 root root 18 Nov 30 17:22 libtiffxx.so.3 -> libtiffxx.so.3.9.4
-rwxr-xr-x 1 root root 9224 May 31 2015 libtiffxx.so.3.9.4
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libusb-0.1.so.4 -> libusb-0.1.so.4.4.4
-rwxr-xr-x 1 root root 35776 May 31 2015 libusb-0.1.so.4.4.4
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libusb-1.0.so.0 -> libusb-1.0.so.0.1.0
-rwxr-xr-x 1 root root 63256 May 31 2015 libusb-1.0.so.0.1.0
lrwxrwxrwx 1 root root 21 Nov 30 17:22 libusbpp-0.1.so.4 -> libusbpp-0.1.so.4.4.4
-rwxr-xr-x 1 root root 21016 May 31 2015 libusbpp-0.1.so.4.4.4
drwxr-xr-x 2 root root 100 Nov 30 17:22 libuser
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libuser.so.1 -> libuser.so.1.2.2
-rwxr-xr-x 1 root root 105624 May 31 2015 libuser.so.1.2.2
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libutempter.so.0 -> libutempter.so.1.1.5
-rwxr-xr-x 1 root root 9264 May 31 2015 libutempter.so.1.1.5
lrwxrwxrwx 1 root root 20 Nov 30 17:22 libwnck-1.so.22 -> libwnck-1.so.22.3.23
-rwxr-xr-x 1 root root 263256 May 31 2015 libwnck-1.so.22.3.23
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libxcb.so -> libxcb.so.1.1.0
lrwxrwxrwx 1 root root 15 Nov 30 17:22 libxcb.so.1 -> libxcb.so.1.1.0
-rwxr-xr-x 1 root root 124728 May 31 2015 libxcb.so.1.1.0
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libxkbfile.so -> libxkbfile.so.1.0.2
lrwxrwxrwx 1 root root 19 Nov 30 17:22 libxkbfile.so.1 -> libxkbfile.so.1.0.2
-rwxr-xr-x 1 root root 151792 May 31 2015 libxkbfile.so.1.0.2
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libxml2.so -> libxml2.so.2.7.6
lrwxrwxrwx 1 root root 16 Nov 30 17:22 libxml2.so.2 -> libxml2.so.2.7.6
-rwxr-xr-x 1 root root 1383368 May 31 2015 libxml2.so.2.7.6
drwxr-xr-x 2 root root 40 May 31 2015 libxslt-plugins
-rw-r--r-- 1 root root 400916 May 31 2015 libxslt.a
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libxslt.so -> libxslt.so.1.1.26
lrwxrwxrwx 1 root root 17 Nov 30 17:22 libxslt.so.1 -> libxslt.so.1.1.26
-rwxr-xr-x 1 root root 250640 May 31 2015 libxslt.so.1.1.26
lrwxrwxrwx 1 root root 25 Nov 30 17:22 libz.so -> ../../lib64/libz.so.1.2.3
drwxr-xr-x 4 root root 80 Nov 30 17:22 lustre
drwxr-xr-x 3 root root 60 Nov 30 17:22 notification-daemon-1.0
drwxr-xr-x 2 root root 60 Nov 30 17:22 nss-yhpc
drwxr-xr-x 55 root root 2120 Nov 30 17:22 perl5
drwxr-xr-x 2 root root 5780 Nov 30 17:22 pkgconfig
drwxr-xr-x 23 root root 12600 Nov 30 17:22 python2.6
drwxr-xr-x 2 root root 460 Nov 30 17:22 sasl2
drwxr-xr-x 3 root root 1560 Nov 30 17:22 slurm
dr-xr-xr-x 2 root root 40 May 31 2015 sse2
drwxr-xr-x 2 root root 60 Nov 30 17:22 tc
dr-xr-xr-x 2 root root 40 May 31 2015 tls
drwxr-xr-x 2 root root 80 Nov 30 17:22 yhrmsYes, the # makes the last line a comment and thus avoids the 48 lines of error code for now.
PrometheusPi
commented
6 years ago Okay, the error is that fftw is installed on the head/compile node, but is not available on the compute node:
ls: cannot access /usr/lib64/libfftw3.so.3: No such file or directoryThe libfftw3.so.3 file does not exist and thus fftw is not found by clara2/the executable.
PrometheusPi
commented
6 years ago @QJohn2017 How did you install fftw on the compute node?
QJohn2017
commented
6 years ago I don't install the fftw on the computer code. I am not the administrator and I does not find the installation location of the fftw
PrometheusPi
commented
6 years ago Okay - then I will try to think of a way how to install fftw on a user level (e.g. in your own home directory).
A further question:
Does tianhe2 have a module system for adding additional libraries?
If yes, what does module av return?
QJohn2017
commented
6 years ago the command module av returns as:
[ac_siom_jsliu_1@ln0%tianhe2-C ~]$ module av
----------------------------------------------------------------------------------- /WORK/app/modulefiles -----------------------------------------------------------------------------------
ADTEx/2.0 Quantum_Espresso/5.2.0_MPI code_saturne/4.0.5 hmmer/3.1b2 pcre/8.37
ARPACK/96-icc Quantum_Espresso/5.3.0_MPI conder/8.5.6 hypre/2.10.1-icc14 pegasus/4.6.2
ARPACK/96-icc15 Quantum_Espresso/6.0_MPI copasi/4.15 hypre/2.10.1-icc15 perl/5.22.0
ARWpost/3.1/00-CF-14 Quantum_Espresso/6.0_MPI_2018 cp2k/2.6.0 ilmbase/2.2.0 perl/5.24.0
ARWpost/3.1/01-CF-15 Quantum_Espresso/6.1_MPI cp2k/2.6.1 impute2/2.3.2_static petsc/3.1-p8
ActiveTcl/8.6 R/3.1.2 cp2k/3.0 intel-compilers/11.1 petsc/3.2-p7
AutoDock/4.2.6 R/3.2.1 cp2k/3.0-v2 intel-compilers/13.0.0 petsc/3.2-p7-with-mumps
AutoDock_Vina/1.1.2 R/3.2.2 cp2k/4.0-17116 intel-compilers/14.0.2 petsc/3.4.4-t
BEAST/1.8.1 R/3.3.0 cp2k/4.1 intel-compilers/15.0.1 petsc/3.5.1-icc14
BEAST/1.8.2 R/3.3.2 cube/4.3 intel-compilers/2017_update4 petsc/3.5.4
BEAST/2.3.1 R/3.4.1 cudnn/4.0-CUDA7.0 intel-compilers/2018 petsc/3.5.4-icc14
BLAS/3.5.0 R/3.4.1-icc13 cudnn/5.0-CUDA8.0 intel-compilers/mkl-14 petsc/3.6.2
BLAS/3.5.0-icc RAxML/20161227 cudnn/5.1-CUDA7.5 intel-compilers/mkl-15 petsc/3.6.2-icc15
BLAS/3.5.0-icc15 RapMap/20060321 cudnn/5.1-CUDA8.0 isl/0.16.1 petsc/3.6.3
BerkeleyGW/1.1~beta RegCM/4.6.0-icc14 cufflinks/2.2.1 jasper/1.900.1/00-CF-14-libpng petsc/3.6.3-complex
BerkeleyGW/1.2.0 RegCM/4.6.1-icc14 curl/7.49.0 jasper/1.900.1/01-CF-15-libpng petsc/3.6.3-complex-debug
Bowtie/1.1.2 SLEPc/3.6.1 cutadapt/1.12 jasper/1.900.1/02-CF-14-shared petsc/3.6.3-gcc492
Bowtie2/2.2.5 SLEPc/3.6.1-icc15 deal.II/8.2.1-icc15 java/jdk1.6.0_45 petsc/3.6.3-icc14-4.7.4
Bowtie2/2.2.6 SLEPc/3.6.3-icc15 deal.II/8.3.0-icc15 java/jdk1.7.0_71 petsc/3.6.3-icc14-4.9.2
CAMx/6.30 STAR/2.5.0 deal.II/8.4.1-icc15 java/jdk1.8.0_11 petsc/3.6.3-icc15-5.3.0
CLAPACK/3.2.1 STAR/2.5.1 deal.II/8.5.0-icc15 jpeg/6b petsc/3.6.4-4.9.2
CMAQ/5.0.2-cb05cl_ae5_aq SWIG/3.0.10-icc15 diamond/0.9.8 julia/0.4.5-icc14 petsc/3.6.4-icc14-4.9.2
CMAQ/5.1 SWIG/3.0.7 elcirc/5.4c jupyter/4.2.3 petsc/3.6.4-icc15-4.9.2
CMAQ/5.2 SWIG/3.0.7-icc15 emacs/24.3 kallisto/0.42.4 petsc/3.7.3
CNTK/1.7.2 TCL/8.5.11 emboss/6.6.0 kggseq/20170318 petsc/3.7.3-icc14
CNTK/2.0 TCL/8.6.3 esmf/6.3.0rp1-icc13-NC kggseq/20170328 petsc/3.7.5-icc14
CNVnator/0.3.2 TCL/8.6.4 esmf/7.0.0-icc13-NC kim-api/v1.7.1 petsc/3.7.5-icc15-4.9.2
CNVnator/0.3.3 TK/8.5.19 esmf/7.0.0-icc14 lamem/20160313 phast/1.3
CONTRA/2.0.6 TK/8.6.3 esmf/7.0.0-icc14-NC lamem/20170228 phonopy/1.11.10.4
CUDA/6.0.37 Trilinos/12.10.1-icc15 esmf/7.0.0-icc14-debug lamem/20170702 phonopy/1.9.6
CUDA/7.0 Trilinos/12.2.1-icc15 fastqc/0.11.5 lammps/10Aug15 phonopy/1.9.7
CUDA/7.5 Trimmomatic/0.35 fastx_toolkit/0.0.14 lammps/11Sep15 picard/1.129
CUDA/8.0 Trinity/v2.3.2 ffmpeg/0.11.1 lammps/15May15 picard/2.9.0
Chaste/3.3 UnderWorld/1.7.0 fftw/2.1.5-double lammps/17Feb16 pigz/2.3.4
Chaste/3.3_source UnderWorld/1.7.0-02 fftw/3.3.4-MPICH2.1.5 lammps/17Feb16-mic pio/1.9.23-icc15
Control-FREEC/7.2 UnderWorld2/20151108 fftw/3.3.4-centos lammps/17Nov16 pio/1.9.23-icc17
DL_POLY/4.07 UnderWorld2/20160615 fftw/3.3.4-default lammps/1Dec12 pio/2.3.1-icc15
DL_POLY/4.07-update VTK/5.10.1 fftw/3.3.4-double lammps/30Sep16 pio/2.3.1-icc17
DL_POLY/4.08 VTK/6.2.0 fftw/3.3.4-double-avx lammps/30Sep16-mic pixman/0.32.6
ESPResSOmd/3.2.0 VTK/7.0.0 fftw/3.3.4-double-avx-sse2 lammps/31Mar17 pkg-config/0.29.1/00-icc
ESPResSOmd/3.3.1 VTK/7.1.1 fftw/3.3.4-double-fma-icc15 lammps/9Dec14 plink/1.07
EXCAVATOR/2.2 VTK/7.1.1-python fftw/3.3.4-gcc lammps/9Dec14-mic plink/1.9
ExomeCNVTest/0.51 VarScan/2.3.7 fftw/3.3.4-icc-float lastz/1.02.00 plinkseq/0.10
FDS/6.1.2 ViennaRNA/2.1.9 fftw/3.3.4-icc-single lastz/1.03.73 plumed/2.1.2
FDS/6.3.0 VisIt/2.12.3 fftw/3.3.4-single-avx leveldb/1.15.0 plumed/2.2.3
FDTD_slution/8.11.337 VisIt/2.9.2 fftw/3.3.4-single-avx-sse2 libevent/2.0.22 pnetcdf/1.6.0/00
FVCOM/3.2.1 WPS/3.6.1/00-CF-14 fftw/3.3.5 libffi/3.2.1 pnetcdf/1.6.1/00-icc15
FVCOM-lib/00-icc14 WPS/3.7.1/01-CF-15 fftw/3.3.5-double libgd/2.1.0 pnetcdf/1.6.1/01-icc13
FVCOM-lib/01-icc14-nometis WPS/3.7.1/02-CF-14 fftw/mkl-14 libgphoto2/2.5.8 pnetcdf/1.9.0/00-icc13
FishingCNV/1.5.3 WPS/3.8.1/00-CF-14 fireworks/1.6.0 libint/1.1.4 pnetcdf/1.9.0/01-icc15
FusionMap/20150331 WPS/3.8.1/02-CF-14-esmf fish/2.1.1 libint/1.1.5 pnetcdf/1.9.0/02-icc17
GATK/3.3.0 WPS/3.9/00-CF-15 fish/2.2.0 libint/2.0.3 postgresql/8.4.22
GATK/3.7 WPS/3.9.0.1/00-CF-15 fish/2.6.0 libpng/1.2.56/00-icc prodigal/2.6.3
GATK/3.8 WRF/3.6.1/00-CF-14-emreal freesurfer/5.3.0 libunwind/1.1 proj/4.9.2-icc13
GATK/4.beta.1 WRF/3.6.1/01-CF-14-chem freetype/2.6 libxc/1.1.0 proj/4.9.2-icc14
GPAW/1.2.0 WRF/3.6.1/03-CF-14-emreal-beta-0.2 fsl/5.0.9 libxc/2.0.0 protobuf/20160825
Gamess_USA/May_01_2013_R1 WRF/3.6.1/04-CF-14-plus gcc/4.7.4 libxc/2.0.1 protobuf/3.1.0
Gamess_USA/may2-2013 WRF/3.7.1/00-CF-15-emreal gcc/4.8.4 libxc/2.2.2 protobuf/v160510-icc
ImageMagick/6.9.2-5 WRF/3.7.1/01-CF-15-emreal-beta-0.2 gcc/4.9.2 libzip/1.1.2 rMATS/3.2.1
JAGS/4.3.0 WRF/3.7.1/02-CF-14-emreal-beta-0.2 gcc/5.2.0 likwid/4.1.0 rar/5.3.b4
JAGS/4.3.0-icc13 WRF/3.8.1/00-CF-14-emreal gcc/5.3.0 lmdb/v20160511 redis/3.2.4
LAPACK/3.5.0 WRF/3.8.1/02-CF-14-esmf gcc/5.4.0 lzlib/1.8 root/6.03.04
LAPACK/3.5.0-icc WRF/3.9/00-CF-15-emreal gcta/1.26.0 makedepf90/2.8.8 rsem/1.2.29
LAPACK/3.5.0-icc15 WanT/2.5.0 gdal/2.1.0-icc14 mcl/14-137 rstudio/server/1.0.136
MEEP/1.2.1 WanT/2.5.1 gdk-pixbuf/2.31.4 med/3.0.8 rsync/3.0.6
METIS/5.1.0 Wannier90/1.2 gemma/0.96 meme/4.11.1 rsync/3.1.2
METIS/5.1.0-32bit Wannier90/2.0.0 geos/3.5.0-icc14 mesa/7.9.2 salmon/20060321
METIS/5.1.0-icc15 Wannier90/2.0.1 get_homologues/20170302 mesa/7.9.2-gcc sambamba/0.6.3
MPB/1.5 Yambo/3.4.1 gflags/2.1.1 mgltools/1.5.6 sambamba/0.6.6
MPFR/2.4.2 abinit/7.10.1 gflags/2.2.1 mongodb/3.2.3 samtools/0.1.19
MPI/Gnu/MPICH/3.1 abinit/7.10.4 ghostscript/9.18 mongodb-api/c-1.4.2 samtools/1.2
MPI/Gnu/MPICH/3.1-4.8.4 abinit/8.0.8 glib/2.44.1 monitor/1.0 samtools/1.3.1
MPI/Gnu/MPICH/3.1-4.9.2 abruijn/1.0-333381f glib/2.45.3 mono/2.10.9 scala/2.11.8
MPI/Gnu/MPICH/3.2-gcc4.4.7-dyn anaconda/1.9.2 glibc/2.14 mpc/0.8.1 scalasca/2.2
MPI/Gnu/MPICH/3.2-gcc4.9.2-dyn anaconda/2.1.0 glibc/2.14-gcc4.9 mpiP/3.4.1 scidb/r960
MPI/Intel/IMPI/4.1.3.048 anaconda/4.2.0 glibc/2.15-gcc4.9 mpiblast/1.6.0 scons/2.3.1
MPI/Intel/IMPI/5.0.2.044 anaconda3/4.2.0 glibc/2.17 mplayer/1.3.0 scons/2.5.1
MPI/Intel/MPICH/2.1.5 annovar/20160201 globus/6.0.1 multiz-tba/20160323 scorep/1.4
MPI/Intel/MPICH/3.1 ant/1.10.1 glog/0.3.3 muparser/2.2.5 sentieon/201704
MPI/Intel/MPICH/3.1-dbg arpack/arpack96 glog/0.3.3-gflags2.2.1 muparser/2.2.5-icc15 serf/1.3.9
MPI/Intel/MPICH/3.1-dyn aspect/1.3-icc15 glue/1.46-Python2.7.9 ncbi-vdb/2.6.4 shapeit/v2.r790
MPI/Intel/MPICH/3.1-icc11 aspect/1.5-icc15 gmap/20160404 ncbi-vdb/2.7.0 siesta/4.0
MPI/Intel/MPICH/3.1-icc13 atk/2.16.0 gmp/4.3.2 nco/4.6.0 siesta/4.0b
MPI/Intel/MPICH/3.1-icc13-dyn atlas/3.10.2 gmt/5.2.1-icc14 nco/4.6.0-icc13 siesta/4.1b3
MPI/Intel/MPICH/3.1-icc15-dyn atompaw/4.0.0.12 gnuplot/5.0.5 nco/4.6.0-icc15 silo/4.10.2
MPI/Intel/MPICH/3.1-large bazel/20160825 gobject-introspection/1.44.0 ncview/2.1.5 silo/4.10.2-hdf5
MPI/Intel/MPICH/3.2-icc14-dyn bbtest/0.9.9 gobject-introspection/1.46.0 nedit/5.6 silo/4.10.2-hdf5-gcc
MPI/Intel/MPICH/3.2-icc14-dyn-centos bcbio/0.9.9 grads/2.0.2 netcdf/3.6.3 sionlib/1.5.4
MPI/Intel/MPICH/3.2-icc2017-dyn bcftools/1.3.1 grass/7.0.4-icc14 netcdf/4.1.3/00-CF-14 slepc/3.6.3
MPI/Intel/MPICH/3.2-icc2018-dyn bcl2fastq/2.17 gri/2.12.23/00-icc14 netcdf/4.1.3/01-CF-13 snappy/1.1.3
MSTmap/20161226 beagle/2.1 grib_api/1.22.0/01-icc14 netcdf/4.1.3/02-CF-14-para snptest/2.5
MUMPS/5.0.1 bedops/2.4.20 gromacs/4.5.1-single netcdf/4.1.3/03-CF-par spades/3.10.1
Meerkat/0.185 bedtools/2.23.0 gromacs/4.5.4-single netcdf/4.3.2/01-CF-14 spark/1.5.1_hadoop-2.6
NAMD/2.10 bedtools/2.25.0 gromacs/4.5.5-double netcdf/4.3.2/02-CF-13 sra-tools/2.6.4
NAMD/2.10-mic bedtools/2.26.0 gromacs/4.5.5-single netcdf/4.3.2/04-CF-4.9.2 sra-tools/2.7.0
NAMD/2.11 bismark/0.16.3 gromacs/4.6.7-double netcdf/4.3.2/05-par-4.9.2 staskfarm/1.0
NAMD/2.12 blasr/5.3.0 gromacs/4.6.7-single netcdf/4.3.3.1/01-CF-15 stringtie/1.3.1c
NCL/6.1.0 blast/2.2.30 gromacs/5.0.4-double netcdf/4.3.3.1/02-CF-15-parallel subversion/1.9.5
NCL/6.3.0 blast/2.5.0 gromacs/5.0.4-mic netcdf/4.4.1/00-CF-15-par swift/0.96.2
NCL/6.4.0-icc blat/36 gromacs/5.0.4-single netcdf/4.4.1/01-CF-14-par swift-t/1.3
Nemo5/r17881 blitz/0.10 gromacs/5.0.4-single-avx-256 netcdf/4.4.1/02-CF-17-par szip/2.1
Nemo5/r20038 boost/1.41.0 gromacs/5.0.4-single-serial netcdf/4.5.0/01-CF-13-par szip/2.1-Gnu
Nemo5/r20175 boost/1.41.0-P279 gromacs/5.0.5-double netcdf/4.5.0/02-CF-17-par szip/2.1-gcc49
OpenCASCADE/0.17 boost/1.41.0-P279-icc gromacs/5.0.5-double-avx-256 ngs/1.2.4 szip/2.1-icc11
OpenCASCADE/0.17-icc15 boost/1.54.0 gromacs/5.0.5-single ngs/1.2.5 szip/2.1-icc15
OpenFOAM/2.1.1 boost/1.54.0-icc-MPI gromacs/5.1.1-single-avx-256 ngsqctoolkit/2.3.3 szip/2.1.1-icc13
OpenFOAM/2.3.1 boost/1.58.0-gcc492-MPI gromacs/5.1.1-single-avx-gpu numdiff/5.8.1-icc15 szip/2.1.1-icc17
OpenFOAM/2.4.0 boost/1.58.0-icc-MPI gromacs/5.1.2-single-avx-256 nwchem/6.5 tensorflow/0.10.0rc0
OpenFOAM/2.x-SOWFA boost/1.59.0-icc15-MPI gromacs/5.1.2-single-avx-gpu ocaml/4.02.3 tensorflow/0.11.0
OpenFOAM/3.0.0 boost/1.62.0 gromacs/5.1.3-single-avx-256 octave/3.8.2 tensorflow/1.0.1_cpu_py35
OpenFOAM/4.0 breakdancer/20160325 gromacs/5.1.4-single-avx-256 octopus/4.0.1 test
Openbabel/2.3.2 bwa/0.7.10 gsl/1.14-icc octopus/4.1.2 theano/0.8.2
Openbabel/2.3.2-python bwa/0.7.12 gsl/1.16 octopus/5.0.1 tinker/7.1.2
PGIcompiler/17.1 bwa/0.7.15 gsl/1.16-gcc opam/1.2.2 tmux/2.0
PSI/20180202 bwa/0.7.15-bwakit gsl/1.16-icc opencmiss/0.3 tophat/2.0.14
PSI/4.0~b5 bzip2/1.0.6 gsl/2.1-icc opencv/1.0.0 trilinos/12.10.1-icc15
Panoply/4.7.0 bzip2/1.0.6-icc13 gtk+/3.0.0 opencv/2.4.11 trilinos/12.6.3
ParaView/3.12.0 bzip2/1.0.6-icc14 guile/2.0.11 opencv/2.4.9 trilinos/12.8.1
ParaView/4.4.0 caffe/v20160510-cpu3 hadoop/2.5.0 opencv/3.0.0 trim_galore/0.4.2
ParaView/5.0.1-bin caffe/v20160511-gpu harfbuzz/0.9.41 openexr/2.0.1 udunits/1.12.11
ParaView/5.0.1-test caffe/v20160511-gpu-icc hdf5/1.8.11/00-CF-14-parallel openexr/2.2.0 udunits/2.2.19
PhyloCSF/20160324 caffe/v20161129-24d2f67-gpu hdf5/1.8.11/01-CF-15-parallel openjpeg/2.1.2/01-icc14 udunits/2.2.19-icc13
Python/2.7.10 caffe/v20161130-gpu-cudnn hdf5/1.8.12/00 openmpi/1.10-intel udunits/2.2.26-icc15
Python/2.7.10-fPIC cairo/1.14.2 hdf5/1.8.12/01-Gnu openmpi/1.10.2 valgrind/3.10.1
Python/2.7.12 cblas/3.5.0 hdf5/1.8.12/02-icc11 openmpi/1.8.3 vcftools/0.1.12b
Python/2.7.3 cdo/1.7.1 hdf5/1.8.12/03-parallel openmpi/1.8.3-intel vcftools/0.1.14
Python/2.7.9 cdo/1.7.1-icc13 hdf5/1.8.12/04 openmx/3.8 velvet/1.2.10
Python/2.7.9-fPIC cellsys/5.0 hdf5/1.8.13/00 osclean vmd/1.9.2
Python/2.7.9-gcc4.9.2 cesm/1.2.2 hdf5/1.8.13/02-CF-14 osenv/set2 vmd/1.9.2-Text-mode
Python/2.7.9-icc15 cgnslib/3.2.1 hdf5/1.8.13/03-CF-13 otf2/1.5.1 xhmm/20150320
Python/3.4.2 chemshell/3.6.0 hdf5/1.8.13/04-gcc49-parallel p4est/1.1.0 xxdiff/4.0.1
Python/3.5.1 cif2cell/1.2.10 hdf5/1.8.13/05-gcc49 p4est/1.1.0-icc15 xz/5.2.2
Python/3.5.1-icc circexplorer2/2.2.6 hdf5/1.8.13/06-CF-15 p7zip/9.20.1 xz/5.2.3
Python/3.6.3 cmake/3.0.2 hdf5/1.8.13/07-gcc492-mpich3.1.3 packmol/parallel xz/5.2.3-icc13
QMMM/GMX cmake/3.2.3 hdf5/1.8.17/00-CF-15-par packmol/serial yaml/0.1.5-icc14
QMMM/LMP_QE cmake/3.5.1 hdf5/1.8.17/01-CF-14-par pango/1.37.0 zlib/1.2.11-icc13
Qt/4.8.6 cmake/3.8.1 hdf5/1.8.18/icc14 parafem/2.0.819 zlib/1.2.11-icc17
Qt/5.5.0 code_saturne/4.0.1 hdf5/1.8.20/01-CF-13-par parallel/20161122 zlib/1.2.8
Quantum_Espresso/5.1.1 code_saturne/4.0.3 hdf5/1.8.20/02-CF-17-par parmetis/4.0.3-mpi zlib/1.2.8-icc13
Quantum_Espresso/5.1.2 code_saturne/4.0.3-med hdf5/1.8.9/00 parmetis/4.0.3-mpi-32bit zlib/1.2.8-icc15
Quantum_Espresso/5.1.2_MPI_ALL code_saturne/4.0.4 hisat2/2.0.5 pcre/8.30 zlib/1.2.8-mic
[ac_siom_jsliu_1@ln0%tianhe2-C ~]$I found the fftw on the return results
PrometheusPi
commented
6 years ago Great! :+1:
Please run:
module load fftw/3.3.5 go to the clara2 source code and:
make clean
make MPIthen edit the test.sh file to:
#!/bin/bash
module load fftw/3.3.5
yhrun -N 2 -n 48 executableand finally yhbatch test.sh.
If it fails at some point, please stop and report the error, if we reach the yhbatch ..., what is the output?
QJohn2017
commented
6 years ago It's a pity that the return results has some errors as follows when I edit the test.sh file according to your suggestion:
/tmp/slurmd/job4953736/slurm_script: /usr/bin/modulecmd: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
...
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
yhrun: error: cn9688: tasks 0-23: Exited with exit code 127Okay - no worry - this looks like a common problem among HPC systems 😄 - they do not know the module system in non-interactive jobs.
Does the following test.sh file help?
#!/bin/bash
. /etc/profile.modules
module load fftw/3.3.5
yhrun -N 2 -n 48 executableThe configuration script might be a bit different on your system. But you will probably find something similar in your home directory .profile and/or .bashrc files.
QJohn2017
commented
6 years ago it's . /etc/profile
QJohn2017
commented
6 years ago When I change the test.sh as:
#!/bin/bash
. /etc/profile
module load fftw/3.3.5
yhrun -N 2 -n 48 executableand submit the job, its return results are:
/usr/share/Modules/init/sh: line 2: /usr/bin/modulecmd: No such file or directory
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
...
executable: error while loading shared libraries: libfftw3.so.3: cannot open shared object file: No such file or directory
yhrun: error: cn9688: tasks 0-23: Exited with exit code 127Which seems the same as before results.
PrometheusPi
commented
6 years ago Okay - then /etc/profile is probably just the default profile.
How is the work flow for loading modules on the compute note on your HPC system?
Could you please post ls -la /etc/ perhaps I can identify the module set up.
QJohn2017
commented
6 years ago When I input the command ls -la /etc/, the results returns:
drwxr-xr-x. 2 root root 4096 Aug 31 2015 logrotate.d
drwxr-xr-x. 4 root root 4096 Jan 5 2015 logwatch
-rw-r--r--. 1 root root 152 Jan 5 2015 lsb-release
drwxr-xr-x. 2 root root 4096 Jan 5 2015 lsb-release.d
-rw-r--r--. 1 root root 10814 Feb 21 2006 ltrace.conf
drwxr-xr-x. 5 root root 4096 Jan 5 2015 lvm
-rw-r--r--. 1 root root 111 Sep 25 2012 magic
drwxr-xr-x. 3 root root 4096 Jan 5 2015 mail
-rw-r--r--. 1 root root 272 Nov 18 2009 mailcap
drwxrwsr-x. 2 root mailman 4096 Jan 5 2015 mailman
-rw-r--r--. 1 root root 1909 May 28 2013 mail.rc
drwxr-xr-x. 2 root root 4096 Jan 5 2015 makedev.d
-rw-r--r--. 1 root root 4940 Nov 17 2012 man.config
drwxr-xr-x. 2 root root 4096 Jan 5 2015 matchbox
drwxr-xr-x. 3 root root 4096 Jan 5 2015 maven
drwxr-xr-x. 3 root root 4096 Jan 5 2015 mc
drwxr-xr-x. 2 root root 4096 Jan 5 2015 mcelog
drwxr-xr-x. 3 root root 4096 Jan 5 2015 mercurial
drwxr-xr-x. 2 root root 4096 Jan 5 2015 mgetty+sendfax
-rw-r--r--. 1 root root 43591 Jun 3 2011 mime.types
-rw-r--r--. 1 root root 1112 Mar 31 2003 minicom.users
-rw-r--r--. 1 root root 931 Feb 3 2011 mip6d.conf
-rw-r--r--. 1 root root 801 Sep 8 2009 mke2fs.conf
-rw-r--r--. 1 root root 7659 Oct 24 2013 mkshrc
drwxr-xr-x. 2 root root 4096 Jun 2 2015 modprobe.d
drwxr-xr-x. 2 root root 4096 Jan 9 2015 modulefiles
-rw-r--r--. 1 root root 0 Jan 12 2010 motd
drwxr-xr-x. 2 root root 4096 Jan 5 2015 mpich2-x86_64
drwxr-xr-x. 3 root root 4096 Jan 8 2015 mpss
drwxr-xr-x. 2 root root 4096 Jan 5 2015 mrtg
-rw-r--r-- 1 root root 796 Feb 11 15:26 mtab
-rw-r--r--. 1 root root 2620 Nov 20 2009 mtools.conf
drwxr-xr-x. 2 root root 4096 Oct 12 2013 multipath
drwxr-xr-x 2 munge munge 4096 Jan 12 2015 munge
-rw-r--r--. 1 root root 131314 Jul 7 2011 Muttrc
-rw-r--r--. 1 root root 32 Jul 7 2011 Muttrc.local
-rw-r--r--. 1 root root 251 Aug 9 2013 my.cnf
drwxr-x---. 2 root named 4096 Aug 14 2013 named
-rw-r-----. 1 root named 1008 Jul 19 2010 named.conf
-rw-r--r--. 1 root named 2389 Aug 14 2013 named.iscdlv.key
-rw-r-----. 1 root named 931 Jun 21 2007 named.rfc1912.zones
-rw-r--r--. 1 root named 487 Jul 19 2010 named.root.key
-rw-r--r--. 1 root root 7846 Aug 12 2010 nanorc
-rw-r--r--. 1 root root 767 Nov 30 2009 netconfig
-rw-r-----. 1 root root 1763 Jan 20 2011 netlabel.rules
drwxr-xr-x. 5 root root 4096 Jan 5 2015 NetworkManager
-rw-r--r--. 1 root root 58 Oct 10 2013 networks
-rw-r--r--. 1 root root 3390 Oct 10 2013 nfsmount.conf
-rw-r--r--. 1 root root 299 Jan 8 2015 nio_id.conf
-rw-r--r-- 1 root root 1897 Nov 12 2014 nscd.conf
-rw-r--r-- 1 root root 4311 Apr 6 2016 nslcd.conf
-rw-------. 1 root root 4248 Jan 5 2015 nslcd.conf.rpmsave
-rw-r--r-- 1 root root 1711 Jan 14 2015 nsswitch.conf
-rw------- 1 root root 859 Nov 11 2014 nss_yhpc.key
-rw-r--r-- 1 root root 1178 Nov 11 2014 nss_yhpc.pub
drwxr-xr-x. 3 root root 4096 Jan 10 2015 ntp
lrwxrwxrwx 1 root root 20 Jan 10 2015 ntp.conf -> /etc/ntp.conf.client
-rw-r--r-- 1 root root 1665 Jan 10 2015 ntp.conf.client
-rw-r--r--. 1 root root 1770 Jul 15 2013 ntp.conf.orig
-rw-r--r-- 1 root root 1565 Nov 12 2014 ntp.conf.primary
-rw-r--r-- 1 root root 1597 Nov 12 2014 ntp.conf.secondary
-rw-r--r--. 1 root root 91 Oct 15 2012 numad.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 obex-data-server
-rw-r--r--. 1 root root 0 Nov 14 2012 odbc.ini
-rw-r--r--. 1 root root 575 Nov 14 2012 odbcinst.ini
drwxr-xr-x. 2 root root 4096 Feb 25 2011 oddjob
-rw-r--r--. 1 root root 4922 Feb 25 2011 oddjobd.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 oddjobd.conf.d
drwxr-xr-x. 2 root root 4096 Jan 5 2015 openhpi
drwxr-xr-x. 6 root root 4096 Jan 14 2015 openldap
drwxr-xr-x. 2 root root 4096 Jan 9 2015 opensm
drwxr-xr-x. 2 root root 4096 Jan 5 2015 openwsman
drwxr-xr-x. 2 root root 4096 Jun 28 2011 opt
-rw-r--r-- 1 root root 12498 Jan 22 2017 ostinfo.fsname
-rw-r--r-- 1 root root 782 Mar 20 2015 ostinfo.HOME
-rw-r--r-- 1 root root 2012 Mar 20 2015 ostinfo.VIP
-rw-r--r-- 1 root root 4118 Mar 20 2015 ostinfo.WORK
drwxr-xr-x. 2 root root 4096 Jan 5 2015 PackageKit
drwxr-xr-x. 2 root root 4096 Mar 31 2015 pam.d
-rw-r--r-- 1 root root 8860 Jan 14 2015 pam_ldap.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 pam_pkcs11
drwxr-xr-x. 3 root root 4096 Jan 5 2015 pango
-rw-r--r-- 1 root root 33 Sep 6 17:31 partition_list
-rw-r--r-- 1 root root 3906 Jan 7 2016 passwd
-rw-------. 1 root root 3834 Jul 28 2015 passwd-
-rw-r--r--. 1 root root 1362 Mar 6 2010 pbm2ppa.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 pcmcia
drwxr-xr-x. 2 root root 4096 Sep 7 2015 pear
-rw-r--r--. 1 root root 946 Oct 26 2011 pear.conf
drwxr-xr-x. 2 root pegasus 4096 Jan 28 16:30 Pegasus
drwxr-xr-x. 2 root root 4096 Jan 5 2015 php.d
-rw-r--r--. 1 root root 69097 Aug 19 2013 php.ini
-rw-r--r--. 1 root root 2872 Jan 7 2010 pinforc
drwxr-xr-x. 3 root root 4096 Jan 5 2015 pkcs11
drwxr-xr-x. 13 root root 4096 Jan 5 2015 pki
drwxr-xr-x. 2 root root 4096 Jan 5 2015 plymouth
drwxr-xr-x. 5 root root 4096 Jan 5 2015 pm
-rw-r--r--. 1 root root 370 Jul 13 2012 pm-utils-hd-apm-restore.conf
-rw-r--r--. 1 root root 6300 Mar 6 2010 pnm2ppa.conf
drwxr-xr-x. 5 root root 4096 Jan 5 2015 polkit-1
drwxr-xr-x. 2 root root 4096 Jan 11 2010 popt.d
drwxr-xr-x. 2 root root 4096 Jan 5 2015 portreserve
drwxr-xr-x. 2 root root 4096 Jan 5 2015 postfix
drwxr-xr-x. 3 root root 4096 Jan 5 2015 ppp
-rw-r--r-- 1 root root 862413 Feb 7 03:36 prelink.cache
-rw-r--r--. 1 root root 789 Jul 19 2013 prelink.conf
drwxr-xr-x. 2 root root 4096 Jan 8 2015 prelink.conf.d
-rw-r--r--. 1 root root 233 Jan 12 2010 printcap
-rw-r--r-- 1 root root 1822 Sep 6 19:33 profile
drwxr-xr-x. 2 root root 4096 Mar 9 2015 profile.d
-rw-r--r--. 1 root root 6455 Jan 12 2010 protocols
-rw-r--r--. 1 root root 1273 Aug 2 2013 ptp4l.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 pulse
-rw-------. 1 root root 0 Jan 5 2015 .pwd.lock
drwxr-xr-x. 2 root root 4096 Jan 5 2015 qpid
drwxr-x--x. 2 quagga quagga 4096 Jan 5 2015 quagga
-rw-r--r--. 1 root root 220 Oct 14 2008 quotagrpadmins
-rwxr-xr-x 1 root root 1338 Sep 6 17:10 quota_set.sh
-rw-r--r--. 1 root root 259 Jun 13 2013 quotatab
drwxr-xr-x. 7 root radiusd 4096 Jan 5 2015 raddb
-rw-r--r--. 1 root root 433 Jun 11 2010 radvd.conf
lrwxrwxrwx. 1 root root 7 Jan 5 2015 rc -> rc.d/rc
lrwxrwxrwx. 1 root root 10 Jan 5 2015 rc0.d -> rc.d/rc0.d
lrwxrwxrwx. 1 root root 10 Jan 5 2015 rc1.d -> rc.d/rc1.d
lrwxrwxrwx. 1 root root 10 Jan 5 2015 rc2.d -> rc.d/rc2.d
lrwxrwxrwx. 1 root root 10 Jan 5 2015 rc3.d -> rc.d/rc3.d
lrwxrwxrwx. 1 root root 10 Jan 5 2015 rc4.d -> rc.d/rc4.d
lrwxrwxrwx. 1 root root 10 Jan 5 2015 rc5.d -> rc.d/rc5.d
lrwxrwxrwx. 1 root root 10 Jan 5 2015 rc6.d -> rc.d/rc6.d
drwxr-xr-x. 10 root root 4096 Feb 14 10:54 rc.d
lrwxrwxrwx. 1 root root 13 Jan 5 2015 rc.local -> rc.d/rc.local
lrwxrwxrwx. 1 root root 15 Jan 5 2015 rc.sysinit -> rc.d/rc.sysinit
drwxr-xr-x. 3 root root 4096 Jan 16 2015 rdma
-rw-r--r--. 1 root root 966 Oct 22 2013 readahead.conf
-rw-r--r--. 1 root root 435 Jan 28 16:29 reader.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 reader.conf.d
drwxr-xr-x. 2 root root 4096 Jan 5 2015 redhat-lsb
-rw-r--r--. 1 root root 55 Oct 30 2013 redhat-release
-rw-r--r--. 1 root root 1434 Oct 17 2011 reposd.conf
-rw-r--r--. 1 root root 1484 Feb 4 2012 request-key.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 request-key.d
-rw-rw-r--. 1 root root 0 Jan 5 2015 resolv.conf
drwxr-xr-x. 5 root root 4096 Jan 5 2015 rhsm
lrwxrwxrwx. 1 root root 11 Jan 5 2015 rmt -> ../sbin/rmt
-rw-r--r-- 1 root root 1615 May 4 2010 rpc
drwxr-xr-x. 2 root root 4096 Jan 9 2015 rpm
drwxr-xr-x. 2 root root 4096 Jan 5 2015 rpmdevtools
drwxr-xr-x. 2 root root 4096 Jan 5 2015 rpmlint
-rw-r--r-- 1 root root 3296 Dec 29 14:52 rsyslog.conf
drwxr-xr-x. 2 root root 4096 Jan 9 2015 rsyslog.d
-rw-r--r--. 1 root root 930 Oct 10 2013 rwtab
drwxr-xr-x. 2 root root 4096 Jan 5 2015 rwtab.d
drwxr-xr-x. 3 root root 4096 Jan 5 2015 sabayon
drwxr-xr-x. 2 root root 4096 Jan 5 2015 samba
drwxr-xr-x. 3 root root 4096 Jan 5 2015 sane.d
drwxr-xr-x. 2 root root 4096 Jan 5 2015 sasl2
drwxr-xr-x. 3 root root 4096 Jan 5 2015 scl
-rw-r--r--. 1 root root 6682 Jan 25 2011 screenrc
-rw-------. 1 root root 122 Jan 12 2010 securetty
drwxr-xr-x. 6 root root 4096 Jan 5 2015 security
drwxr-xr-x. 3 root root 4096 Jan 9 2015 selinux
-rw-r--r--. 1 root root 6845 Sep 19 2012 sensors3.conf
-rw-r--r--. 1 root root 641020 Aug 20 2013 services
-rw-r--r--. 1 root root 216 Oct 15 2013 sestatus.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 setroubleshoot
drwxr-xr-x. 2 root root 4096 Jan 5 2015 setuptool.d
drwxr-xr-x. 2 root root 4096 Jan 5 2015 sfcb
drwxr-xr-x. 3 root root 4096 Jan 5 2015 sgml
---------- 1 root root 1739 Aug 31 2015 shadow
----------. 1 root root 1717 Jul 28 2015 shadow-
-rw-r--r--. 1 root root 89 Jan 5 2015 shells
drwxr-xr-x. 4 root root 4096 Mar 6 2015 skel
-rw-r--r--. 1 root root 12177 Jul 28 2011 slp.conf
-rw-r--r--. 1 root root 2707 Jul 28 2011 slp.spi
drwxr-xr-x 5 root root 4096 Jun 2 2015 slurm
-rw-r--r--. 1 root root 6717 Sep 26 2012 smartd.conf
-rw-r--r--. 1 root root 1272 Jan 4 2008 smi.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 smrsh
-rw-r--r--. 1 root root 912 Jun 30 2010 smt_dhcp_ra_support.conf
-rw-r--r--. 1 root root 1100 Jun 30 2010 smt_dns_ra_support.conf
-rw-r--r--. 1 root root 1789 Jun 30 2010 smt_smb_ra_support.conf
-rw-r--r--. 1 root root 975 Jun 30 2010 smt_smb_ra_synonyms.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 snmp
-rw-r--r--. 1 root root 260 Oct 21 2013 sos.conf
drwxr-xr-x. 3 root root 4096 Jan 5 2015 sound
drwxr-xr-x. 2 root root 4096 Jan 5 2015 spice
drwxr-xr-x. 2 root root 4096 Jan 5 2015 squid
-rw-r--r--. 1 root root 570 Jan 9 2015 srp_daemon.conf
drwxr-xr-x. 3 root root 4096 Dec 24 08:51 ssh
drwxr-xr-x. 2 root root 4096 Jan 5 2015 ssl
drwx------. 2 root root 4096 Oct 23 2013 sssd
drwxr-xr-x. 3 root root 4096 Jan 5 2015 stap-server
-rw-r--r--. 1 root root 212 Oct 10 2013 statetab
drwxr-xr-x. 2 root root 4096 Oct 10 2013 statetab.d
drwxr-xr-x. 2 root root 4096 Apr 1 2013 stunnel
drwxr-xr-x. 2 root root 4096 Apr 2 2013 subversion
-rw-r-----. 1 root root 1786 Sep 25 2012 sudo.conf
-r--r----- 1 root root 4052 Nov 15 2016 sudoers
drwxr-x---. 2 root root 4096 Mar 5 2015 sudoers.d
-rw-r-----. 1 root root 3181 Oct 7 2013 sudo-ldap.conf
drwxr-xr-x. 9 root root 4096 Jul 28 2016 sysconfig
-rw-r--r--. 1 root root 1150 Oct 10 2013 sysctl.conf
drwxr-xr-x. 2 root root 4096 Jan 9 2015 sysctl.d
lrwxrwxrwx. 1 root root 14 Jan 5 2015 system-release -> redhat-release
-rw-r--r--. 1 root root 49 Oct 30 2013 system-release-cpe
drwxr-xr-x. 6 root root 4096 Jan 5 2015 systemtap
drwxr-xr-x. 3 root root 4096 Jan 5 2015 target
-rw-------. 1 tss tss 6411 Jul 8 2010 tcsd.conf
-rw-r--r--. 1 root root 981068 Jan 5 2015 termcap
drwxr-xr-x. 2 root root 4096 Dec 4 2009 terminfo
drwxr-xr-x. 3 root root 4096 Jan 5 2015 texmf
drwxr-xr-x. 2 root root 4096 Jan 9 2015 tgt
-rw-r--r-- 1 root root 62 Aug 11 2017 ThModule.conf
drwxrwxr-x. 3 root tomcat 4096 Jan 5 2015 tomcat6
-rw-r--r--. 1 root root 45 Mar 18 2013 Trolltech.conf
lrwxrwxrwx. 1 root root 37 Jan 5 2015 tuned.conf -> /etc/tune-profiles/default/tuned.conf
drwxr-xr-x. 14 root root 4096 Jan 5 2015 tune-profiles
drwxr-xr-x. 4 root root 4096 Jan 9 2015 udev
-rw-r--r--. 1 root root 473 Sep 24 2012 updatedb.conf
-rw-r--r--. 1 root root 313 Jul 4 2000 urlview.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 vbox
-rw-r--r--. 1 root root 1962 Feb 17 2012 vimrc
-rw-r--r--. 1 root root 1962 Feb 17 2012 virc
-rw-r--r--. 1 root root 1964 Oct 23 2013 virt-v2v.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 vsftpd
-rw-r--r--. 1 root root 3008 Jun 13 2013 warnquota.conf
-rw-r--r--. 1 root root 1051 Aug 8 2013 watchdog.conf
drwxr-xr-x. 2 root root 4096 Aug 8 2013 watchdog.d
-rw-r--r--. 1 root root 23735 Sep 9 2004 webalizer.conf
-rw-r--r--. 1 root root 4479 Oct 1 2012 wgetrc
drwxr-xr-x. 2 root root 4096 Jan 5 2015 wpa_supplicant
-rw-r--r--. 1 root root 0 Dec 18 2009 wvdial.conf
drwxr-xr-x. 9 root root 4096 Jan 5 2015 X11
drwxr-xr-x. 4 root root 4096 Jan 5 2015 xdg
-rw-r--r--. 1 root root 12986 Jan 6 2010 xferstats.cfg
-rw-------. 1 root root 1001 Sep 24 2013 xinetd.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 xinetd.d
drwxr-xr-x. 2 root root 4096 Jan 5 2015 xml
-rw-r--r--. 1 root root 585 Oct 10 2012 yp.conf
-rw-r--r--. 1 root root 1761 Oct 1 2013 ypserv.conf
drwxr-xr-x. 5 root root 4096 Jan 5 2015 yum
-rw-r--r--. 1 root root 813 Jan 9 2013 yum.conf
drwxr-xr-x. 2 root root 4096 Jan 5 2015 yum.repos.d
drwxr-xr-x 3 root root 4096 Sep 2 2015 zabbix
-rw-r--r--. 1 root root 252 Aug 6 2013 zlogin
-rw-r--r--. 1 root root 86 Aug 6 2013 zlogout
-rw-r--r--. 1 root root 375 Aug 6 2013 zprofile
-rw-r--r--. 1 root root 304 Aug 6 2013 zshenv
-rw-r--r--. 1 root root 883 Aug 6 2013 zshrc
[ac_siom_jsliu_1@ln3%tianhe2-C src]$Because the output files are too much and my computer screen is small, so the output results only displayed partial.
PrometheusPi
commented
6 years ago The partial result might be enough: What is the output of
ls -la /etc/profile.d/
As needed by @QJohn2017 a setup script for tianhe2 is needed (see #89). Since tianhe2 uses SLURM for scheduling, either the
./prepare_jobscript needs to be adjusted to an./prepare_job_tianhe2.shscript which creates a SLURM submit file or we go directly with an submit file that focuses on MPI jobs only (since tianhe2 is large and probably has to handle quite a lot of jobs, MPI is probably the better choice for this system).Additionally, submit scripts for other clusters (taurus, PizDaint, etc.) should be provided.
@QJohn2017 Are you planing to submit with MPI only or are you also considering running SLURM Array jobs? If only an MPI job is planned, a simple submit script should be sufficient.