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Computomics / MethylScore

Identification of differentially methylated regions between multiple epigenomes from BS-treated read mappings via methylated region calling
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-params-file option missing #2

Open acontrerasg opened 1 year ago

acontrerasg commented 1 year ago

Hello! I have encountered a rather silly problem, I hope, when providing just a .yaml file to run the tool as:

nextflow run Computomics/MethylScore -params-file==PATH/TO/FILE.yaml

I got the error message:

Unknown option: -params-file -- Check the available commands and options and syntax with 'help'

Any reason why it cannot parse the option?

Thanks!

bio15anu commented 1 year ago

What version of Nextflow are you running? This feature wasn't always available, but it's a bit of a long shot because I think it was already implemented in 2017 or so. Double-check the syntax inside the yaml file as well, because sometimes Nextflow isn't particularly informative with its error messages and it could maybe be referring to one of the options within.