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ConesaLab / MultiPower

Statistical power studies for multi-omics experiments.
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Error in if (type == 1) { : missing value where TRUE/FALSE needed #9

Open sandralu19 opened 1 year ago

sandralu19 commented 1 year ago

Hi,

I'm trying to run the Multipower analysis based on the instructions and the default parameters in the User's Guide:

MultiPower(statdata, groups = statdesign, type = 2, omicPower = 0.6, averagePower = 0.85, fdr = 0.05, cost = 1, equalSize = TRUE, max.size = 200, omicCol = NULL, powerPlots = TRUE, null.effect = 0)

When running the code, this message appears:

Estimating parameters for omic: meta Parameters are to be estimated for normally distributed data Estimating parameters for omic: geno [1] "11460 constant features are to be removed from the analysis." Error in if (type == 1) { : missing value where TRUE/FALSE needed

I was wondering if you could help me with this, or suggest possible solutions as I believe your package would be helpful for my research.

Thanks, Sandra.

soniatarazona commented 1 year ago

Hi Sandra,

Please, indicate the data type for each of the omics:

type: Vector with length equal to the number of omic data types. Each element of this vector must be a 1, 2 or 3 to indicate whether the omic data are count data (1), continuous data approximately following a normal distribution (2) or binary data (3).

Thanks for using MultiPower!

Sonia