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ConesaLab / SQANTI3

Tool for the Quality Control of Long-Read Defined Transcriptomes
GNU General Public License v3.0
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[BUG] #313

Open xiekunwhy opened 1 week ago

xiekunwhy commented 1 week ago

Is there an existing issue for this?

Have you loaded the SQANTI3.env conda environment?

Problem description

There is no rbu.mRNA.all.pacbio.gtf.cds.gff file in final output directory.

Code sample

/Bio/User/kxie/software/mambaforge/envs/sqanti3/bin/python /Bio/User/kxie/software/SQANTI3/sqanti3_qc.py --force_id_ignore --isoAnnotLite --cpus 20 --chunks 20 rbu.mRNA.all.pacbio.gtf EVM.all.addname.gtf rbu.fa

Error

image

Anything else?

No response

alexpan00 commented 4 days ago

Hi @xiekunwhy,

Did you get any error?

Alejandro