[BUG] An error occurred while installing package bioconda::bioconductor-genomeinfodbdata-1.2.11-r43hdfd78af_1

[emsisson]

Is there an existing issue for this?

• [X] I have searched the existing issues

Have you loaded the SQANTI3.env conda environment?

• [X] I have loaded the SQANTI3.env conda environment

Problem description

Using Miniconda3-py39_4.12.0 and running command

conda env create -f SQANTI3.conda_env.yml

failed with message

ERROR conda.core.link:_execute(952): An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.11-r43hdfd78af_1'.

Code sample

No response

Error

No response

Anything else?

After much experimenting I traced the problem to the version of Conda package libnghttp2. Conda installed the latest version, 1.58.0, but forcing installation of previous version 1.55.1 allowed the installation to complete successfully. I edited file SQANTI3.conda_env.yml to add the following line to section dependencies:

- libnghttp2=1.55.1

This solved my problem, so this issue can be closed. I am posting this for the benefit of others.

[Fabian-RY]

Hi @emsisson

Thanks for your contribution. I've recreated the Conda environment in different installations of conda, and the environments are created correctly without any error with libnghttp2 version 1.58.0.

I'll close the issue, I'm thinking it might be a dependency conflict in your base environment?