A user can build a workflow inside a docker image that is based on a SeqWare docker image, and thus contains SeqWare and the workflow in a single image. If they do this, they won't need to mount an external /workflow directory, so this should be optional.
A user can build a workflow inside a docker image that is based on a SeqWare docker image, and thus contains SeqWare and the workflow in a single image. If they do this, they won't need to mount an external
/workflow
directory, so this should be optional.See: https://github.com/Consonance/consonance/blob/a237f608beddc0ddbdb1ccd559092fa0c6f846e2/pancancer-arch-3/src/main/java/info/pancancer/arch3/worker/WorkerRunnable.java#L317