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Consonance / consonance

Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
GNU General Public License v3.0
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reporting dumps text on console #70

Closed SolomonShorser-OICR closed 9 years ago

SolomonShorser-OICR commented 9 years ago

When the Pancancer CLI uses functionality in the Reporting jar, there's a big dump on the console starting with:

20:35:04,253 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.groovy]
20:35:04,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
20:35:04,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [jar:file:/home/ubuntu/arch3/bin/pancancer-reporting-1.1-beta.4.jar!/logback.xml]
20:35:04,270 |-INFO in ch.qos.logback.core.joran.spi.ConfigurationWatchList@763d9750 - URL [jar:file:/home/ubuntu/arch3/bin/pancancer-reporting-1.1-beta.4.jar!/logback.xml] is not of type file
20:35:04,323 |-INFO in ch.qos.logback.classic.joran.action.ConfigurationAction - debug attribute not set
20:35:04,327 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - About to instantiate appender of type [ch.qos.logback.core.rolling.RollingFileAppender]
20:35:04,334 |-INFO in ch.qos.logback.core.joran.action.AppenderAction - Naming appender as [FILE_APPENDER]
20:35:04,377 |-ERROR in ch.qos.logback.core.joran.spi.Interpreter@8:23 - no applicable action for [minIndex], current ElementPath  is [[configuration][appender][rollingPolicy][minIndex]]
20:35:04,377 |-ERROR in ch.qos.logback.core.joran.spi.Interpreter@9:23 - no applicable action for [maxIndex], current ElementPath  is [[configuration][appender][rollingPolicy][maxIndex]]
...

Not sure if this is caused by the message saying 20:35:04,270 |-INFO in ch.qos.logback.core.joran.spi.ConfigurationWatchList@763d9750 - URL [jar:file:/home/ubuntu/arch3/bin/pancancer-reporting-1.1-beta.4.jar!/logback.xml] is not of type file or if it's related to the ERROR message saying: 20:35:04,377 |-ERROR in ch.qos.logback.core.joran.spi.Interpreter@8:23 - no applicable action for [minIndex], current ElementPath is [[configuration][appender][rollingPolicy][minIndex]]. I think the logback file is just old and out of date, should probably be synced up with the regular arch3 logback config file (with changes to the logging file name, of course).