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ContentMine / phylotree

A repository for ami-phylotree development
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Add pruning for incomplete or malformed tips #37

Open petermr opened 9 years ago

petermr commented 9 years ago

All successful parses will results in 

<genus> <species> <strain> <egid>

These are then further validated via lookup to remove cases where 

<genus+species> != <binomial looked up from egid>

all tips failing these tests should be pruned from the tree used for further processing ("validTree"). (The incorrect otus can be retained but not used).