Open rossmounce opened 9 years ago
All our NeXML files aren't quite valid at the moment. As validated against: http://www.nexml.org/nexml/phylows/validator
we currently have:
... <otus label="RootTaxaBlock" xmlns:cmphy="http://contentmine.org/phylotree"> <otu id="otu1">Marinobacler hydrocarbonoclasticus ATCC 49840T (ABO19148)</otu> <otu id="otu2">Microbulbifer hydrolyticus DSM 11525T (U5813138)</otu> ... </otus> <trees> <tree id="T1"> <node id="NT1.1" label="NT1.1" x="119.0" y="292.0"/> ...
Instead, we need a reference from trees to the otus tag e.g.:
... <otus about="#Tls34455" id="Tls34455" label="Taxa" xml:base="http://purl.org/phylo/treebase/phylows/taxon/TB2:" label="RootTaxaBlock" xmlns:cmphy="http://contentmine.org/phylotree"> <otu id="otu1">Marinobacler hydrocarbonoclasticus ATCC 49840T (ABO19148)</otu> <otu id="otu2">Microbulbifer hydrolyticus DSM 11525T (U5813138)</otu> ... </otus> <trees otus="Tls34455"> <tree id="T1"> <node id="NT1.1" label="NT1.1" x="119.0" y="292.0"/> ...
All our NeXML files aren't quite valid at the moment. As validated against: http://www.nexml.org/nexml/phylows/validator
we currently have:
Instead, we need a reference from trees to the otus tag e.g.: