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A repository for ami-phylotree development
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Local Genus and species lookup #42

Closed petermr closed 9 years ago

petermr commented 9 years ago

NCBI taxdump has approximate format:

9   |   Buchnera aphidicola |       |   scientific name |
9   |   Buchnera aphidicola Munson et al. 1991  |       |   synonym |
10  |   "Cellvibrio" Winogradsky 1929   |       |   synonym |
10  |   Cellvibrio  |       |   scientific name |
10  |   Cellvibrio (ex Winogradsky 1929) Blackall et al. 1986 emend. Humphry et al. 2003    |       |   synonym |
11  |   "Cellvibrio gilvus" Hulcher and King 1958   |       |   authority   |
11  |   Cellvibrio gilvus   |       |   equivalent name |
11  |   [Cellvibrio] gilvus |       |   scientific name |
13  |   Dictyoglomus    |       |   scientific name |
13  |   Dictyoglomus Saiki et al. 1985  |       |   authority   |
14  |   ATCC 35947  |       |   type material   |
14  |   DSM 3960    |       |   type material   |
14  |   Dictyoglomus thermophilum   |       |   scientific name |
14  |   Dictyoglomus thermophilum Saiki et al. 1985 |       |   authority   |
14  |   strain H-6-12   |       |   type material   |
16  |   Methyliphilus   |       |   equivalent name |
16  |   Methylophilus   |       |   scientific name |
16  |   Methylophilus Jenkins et al. 1987   |       |   synonym |
16  |   Methylotrophus  |       |   misspelling |
17  |   ATCC 53528  |       |   type material   |
17  |   DSM 46235   |       |   type material   |
17  |   LMG 6787    |       |   type material   |
17  |   Methyliphilus methylitrophus    |       |   equivalent name |
17  |   Methyliphilus methylotrophus    |       |   equivalent name |
17  |   Methylophilus methylitrophus    |       |   equivalent name |
17  |   Methylophilus methylotrophus    |       |   scientific name |
17  |   Methylophilus methylotrophus Jenkins et al. 1987    |       |   authority   |
17  |   Methylophilus sp. CBMB147   |       |   includes    |
17  |   Methylotrophus methylophilus    |       |   synonym |
17  |   NCIB 10515  |       |   type material   |
17  |   NCIMB 10515 |       |   type material   |
17  |   VKM B-1623  |       |   type material   |
18  |   Pelobacter  |       |   scientific name |
18  |   Pelobacter Schink and Pfennig 1983  |       |   authority   |
19  |   DSM 2380    |       |   type material   |
19  |   NBRC 103641 |       |   type material   |
19  |   Pelobacter carbinolicus |       |   scientific name |
19  |   Pelobacter carbinolicus Schink 1984 |       |   authority   |
19  |   strain Gra Bd 1 |       |   type material   |
20  |   Phenylobacterium    |       |   scientific name |

We will develop this as a local lookup for Genus and species

petermr commented 9 years ago

[merge with 43]