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anaconda FASTA36 version out of date #10210

Closed wrpearson closed 5 years ago

wrpearson commented 5 years ago

The current version of the FASTA36 package (FASTA3) is 36.3.8g dated August, 2018. The version distributed by bioconda is 36.6.8g dated December, 2017. This older version has some bugs that have been corrected in the August 2018 version. How do I get the bioconda distribution updated?

Actual Behavior

$ /usr/local/anaconda2/bin/fasta36 -h USAGE fasta36 [-options] query_file library_file [ktup] fasta36 -help for a complete option list

DESCRIPTION FASTA searches a protein or DNA sequence data bank version: 36.3.8g Dec, 2017

COMMON OPTIONS (options must preceed query_file library_file) -s: [BL50] scoring matrix; -f: [-10] gap-open penalty; -g: [-2] gap-extension penalty; -S filter lowercase (seg) residues; -b: high scores reported (limited by -E by default); -d: number of alignments shown (limited by -E by default); -I interactive mode

Expected Behavior

Current version: $ /seqprg/bin/fasta36 -h USAGE fasta36 [-options] query_file library_file [ktup] fasta36 -help for a complete option list

DESCRIPTION FASTA searches a protein or DNA sequence data bank version: 36.3.8g Aug, 2018

COMMON OPTIONS (options must preceed query_file library_file) -s: [BL50] scoring matrix; -f: [-10] gap-open penalty; -g: [-2] gap-extension penalty; -S filter lowercase (seg) residues; -b: high scores reported (limited by -E by default); -d: number of alignments shown (limited by -E by default); -I interactive mode;

Steps to Reproduce

.../anaconda2/bin/fasta36 -h

Anaconda or Miniconda version:

conda -V conda 4.5.11

Operating System:

Centos7

conda info
$ conda info

     active environment : None
       user config file : /rdhome/users/wrp/.condarc
 populated config files : /rdhome/users/wrp/.condarc
          conda version : 4.5.11
    conda-build version : 3.0.27
         python version : 2.7.15.final.0
       base environment : /usr/local/anaconda2  (read only)
           channel URLs : https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/free/linux-64
                          https://repo.anaconda.com/pkgs/free/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
                          https://repo.anaconda.com/pkgs/pro/linux-64
                          https://repo.anaconda.com/pkgs/pro/noarch
          package cache : /usr/local/anaconda2/pkgs
                          /rdhome/users/wrp/.conda/pkgs
       envs directories : /rdhome/users/wrp/.conda/envs
                          /usr/local/anaconda2/envs
               platform : linux-64
             user-agent : conda/4.5.11 requests/2.18.4 CPython/2.7.15 Linux/3.10.0-862.14.4.el7.x86_64 centos/7 glibc/2.17
                UID:GID : 556:556
             netrc file : None
           offline mode : False
conda list --show-channel-urls
# packages in environment at /usr/local/anaconda2:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0            py27h08a7f0c_0    defaults
_r-mutex                  1.0.0                     mro_2    r
alabaster                 0.7.10           py27he5a193a_0    defaults
anaconda                  custom           py27h4a00acb_0    defaults
anaconda-client           1.6.5            py27hc8169bf_0    defaults
anaconda-navigator        1.6.9            py27hfbc306d_0    defaults
anaconda-project          0.8.0            py27hd7a9a97_0    defaults
asn1crypto                0.22.0           py27h94ebe91_1    defaults
astroid                   1.5.3            py27h8f8f47c_0    defaults
astropy                   2.0.2            py27h57072c0_4    defaults
babel                     2.5.0            py27h20693cd_0    defaults
backports                 1.0              py27h63c9359_1    defaults
backports.functools_lru_cache 1.4              py27he8db605_1    defaults
backports.shutil_get_terminal_size 1.0.0            py27h5bc021e_2    defaults
backports_abc             0.5              py27h7b3c97b_0    defaults
beautifulsoup4            4.6.0            py27h3f86ba9_1    defaults
binutils_impl_linux-64    2.28.1               had2808c_3    defaults
binutils_linux-64         7.2.0                        26    defaults
biopython                 1.70                      <pip>
bitarray                  0.8.1            py27h304d4c6_0    defaults
bkcharts                  0.2              py27h241ae91_0    defaults
blas                      1.0                         mkl    defaults
blaze                     0.11.3           py27h5f341da_0    defaults
bleach                    2.0.0            py27h3a0dcc8_0    defaults
bokeh                     0.12.10          py27he46cc6b_0    defaults
boost                     1.64.0                   py27_4    conda-forge
boost-cpp                 1.64.0                        1    conda-forge
boto                      2.48.0           py27h9556ac2_1    defaults
bottleneck                1.2.1            py27h21b16a3_0    defaults
bowtie                    1.2.2            py27h2d50403_1    bioconda
bowtie2                   2.3.4.1          py27h2d50403_1    bioconda
bzip2                     1.0.6                h0376d23_1    defaults
ca-certificates           2018.10.15           ha4d7672_0    conda-forge
cairo                     1.14.12              h77bcde2_0    defaults
cdecimal                  2.3              py27h4e63abe_1    defaults
certifi                   2018.10.15            py27_1000    conda-forge
cffi                      1.10.0           py27hf1aaaf4_1    defaults
chardet                   3.0.4            py27hfa10054_1    defaults
click                     6.7              py27h4225b90_0    defaults
cloudpickle               0.4.0            py27ha64365b_0    defaults
clyent                    1.2.2            py27h7276e6c_1    defaults
collectl                  4.0.4                         2    bioconda
colorama                  0.3.9            py27h5cde069_0    defaults
conda                     4.5.11                py27_1000    conda-forge
conda-build               3.0.27           py27hff9f855_0    defaults
conda-env                 2.6.0                h36134e3_1    defaults
conda-verify              2.0.0            py27hf052a9d_0    defaults
configparser              3.5.0            py27h5117587_0    defaults
contextlib2               0.5.5            py27hbf4c468_0    defaults
cryptography              2.0.3            py27hea39389_1    defaults
curl                      7.59.0               h84994c4_0    defaults
cycler                    0.10.0           py27hc7354d3_0    defaults
cython                    0.26.1           py27hdbcff32_0    defaults
cytoolz                   0.8.2            py27hf14aec9_0    defaults
dask                      0.15.3           py27hb94b45f_0    defaults
dask-core                 0.15.3           py27h53a7ee6_0    defaults
datashape                 0.5.4            py27hf507385_0    defaults
dbus                      1.10.22              h3b5a359_0    defaults
decorator                 4.1.2            py27h1544723_0    defaults
distributed               1.19.1           py27h38c4a05_0    defaults
docutils                  0.14             py27hae222c1_0    defaults
entrypoints               0.2.3            py27h502b47d_2    defaults
enum34                    1.1.6            py27h99a27e9_1    defaults
et_xmlfile                1.0.1            py27h75840f5_0    defaults
expat                     2.2.4                hc00ebd1_1    defaults
fasta3                    36.3.8               h470a237_4    bioconda
fastcache                 1.0.2            py27h4cb8e01_0    defaults
fastool                   0.1.4                ha92aebf_3    bioconda
filelock                  2.0.12           py27h38fa839_0    defaults
flask                     0.12.2           py27h6d5c1cd_0    defaults
flask-cors                3.0.3            py27h1a8a27f_0    defaults
fontconfig                2.12.4               h88586e7_1    defaults
freetype                  2.8                  h52ed37b_0    defaults
funcsigs                  1.0.2            py27h83f16ab_0    defaults
functools32               3.2.3.2          py27h4ead58f_1    defaults
futures                   3.1.1            py27hdbc8cbb_0    defaults
gcc_impl_linux-64         7.2.0                habb00fd_3    defaults
gcc_linux-64              7.2.0                        26    defaults
get_terminal_size         1.0.0                haa9412d_0    defaults
gevent                    1.2.2            py27h475ea6a_0    defaults
gfortran_impl_linux-64    7.2.0                hdf63c60_3    defaults
gfortran_linux-64         7.2.0                        26    defaults
glib                      2.53.6               hc861d11_1    defaults
glob2                     0.5              py27hd3b7d1f_1    defaults
gmp                       6.1.2                hb3b607b_0    defaults
gmpy2                     2.0.8            py27hc856308_1    defaults
graphite2                 1.3.10               hc526e54_0    defaults
greenlet                  0.4.12           py27hac09c53_0    defaults
grin                      1.2.1            py27h54abee7_1    defaults
gst-plugins-base          1.12.2               he3457e5_0    defaults
gstreamer                 1.12.2               h4f93127_0    defaults
gxx_impl_linux-64         7.2.0                hdf63c60_3    defaults
gxx_linux-64              7.2.0                        26    defaults
h5py                      2.7.0            py27h71d1790_1    defaults
harfbuzz                  1.7.6                hc5b324e_0    defaults
hdf5                      1.10.1               hb0523eb_0    defaults
heapdict                  1.0.0            py27h33770af_0    defaults
html5lib                  0.999999999      py27hdf15f34_0    defaults
icu                       58.2                 h211956c_0    defaults
idna                      2.6              py27h5722d68_1    defaults
imageio                   2.2.0            py27hf108a7f_0    defaults
imagesize                 0.7.1            py27hd17bf80_0    defaults
intel-openmp              2018.0.0             h15fc484_7    defaults
ipaddress                 1.0.18           py27h337fd85_0    defaults
ipykernel                 4.6.1            py27hc93e584_0    defaults
ipython                   5.4.1            py27h36c99b6_1    defaults
ipython_genutils          0.2.0            py27h89fb69b_0    defaults
ipywidgets                7.0.0            py27h4fda95d_0    defaults
isort                     4.2.15           py27hcfa4749_0    defaults
itsdangerous              0.24             py27hb8295c1_1    defaults
jbig                      2.1                  hdba287a_0    defaults
jdcal                     1.3              py27h2cc5433_0    defaults
jedi                      0.10.2           py27h8af4e35_0    defaults
jellyfish                 2.2.10               h2d50403_0    bioconda
jemalloc                  4.5.0                         0    bioconda
jinja2                    2.9.6            py27h82327ae_1    defaults
jpeg                      9b                   habf39ab_1    defaults
jsonschema                2.6.0            py27h7ed5aa4_0    defaults
jupyter                   1.0.0            py27h505fd4b_0    defaults
jupyter_client            5.1.0            py27hbee1118_0    defaults
jupyter_console           5.2.0            py27hc6bee7e_1    defaults
jupyter_core              4.3.0            py27hcd9ae3a_0    defaults
jupyterlab                0.27.0           py27h42ebfef_2    defaults
jupyterlab_launcher       0.4.0            py27h0e16d15_0    defaults
lazy-object-proxy         1.3.1            py27h682c727_0    defaults
libcurl                   7.59.0               h1ad7b7a_0    defaults
libdeflate                1.0                  h470a237_0    bioconda
libedit                   3.1.20170329                  0    conda-forge
libffi                    3.2.1                h4deb6c0_3    defaults
libgcc                    7.2.0                h69d50b8_2    defaults
libgcc-ng                 7.2.0                h7cc24e2_2    defaults
libgfortran-ng            7.2.0                h9f7466a_2    defaults
libpng                    1.6.34               hb9fc6fc_0    defaults
libsodium                 1.0.13               h31c71d8_2    defaults
libssh2                   1.8.0                h8c220ad_2    defaults
libstdcxx-ng              7.2.0                h7a57d05_2    defaults
libtiff                   4.0.8                h90200ff_9    defaults
libtool                   2.4.6                hd50d1a6_0    defaults
libxcb                    1.12                 h84ff03f_3    defaults
libxml2                   2.9.4                h6b072ca_5    defaults
libxslt                   1.1.29               hcf9102b_5    defaults
llvmlite                  0.20.0                   py27_0    defaults
locket                    0.2.0            py27h73929a2_1    defaults
lxml                      4.1.0            py27hb025457_0    defaults
lzo                       2.10                 h1bfc0ba_1    defaults
markupsafe                1.0              py27h97b2822_1    defaults
matplotlib                2.1.0            py27h09aba24_0    defaults
mccabe                    0.6.1            py27h0e7c7be_1    defaults
mistune                   0.7.4            py27h6da7e90_0    defaults
mkl                       2018.0.0             hb491cac_4    defaults
mkl-service               1.1.2            py27hb2d42c5_4    defaults
mpc                       1.0.3                hf803216_4    defaults
mpfr                      3.1.5                h12ff648_1    defaults
mpmath                    0.19             py27h4bb41bd_2    defaults
mro-base                  3.4.3                h1c2f66e_0    r
mro-basics                3.4.3                         0    r
msgpack-python            0.4.8            py27hc2fa789_0    defaults
multipledispatch          0.4.9            py27h9b5f95a_0    defaults
MySQL-python              1.2.5                     <pip>
navigator-updater         0.1.0            py27h0f9cd39_0    defaults
nbconvert                 5.3.1            py27he041f76_0    defaults
nbformat                  4.4.0            py27hed7f2b2_0    defaults
ncurses                   5.9                          10    conda-forge
networkx                  2.0              py27hfc23926_0    defaults
nltk                      3.2.4            py27h41293c3_0    defaults
nose                      1.3.7            py27heec2199_2    defaults
notebook                  5.0.0            py27h3661c2b_2    defaults
numba                     0.35.0             np113py27_10    defaults
numexpr                   2.6.2            py27he5efce1_1    defaults
numpy                     1.14.2           py27hdbf6ddf_0    defaults
numpydoc                  0.7.0            py27h9647a75_0    defaults
odo                       0.5.1            py27h9170de3_0    defaults
olefile                   0.44             py27h4bd3e3c_0    defaults
openjdk                   8.0.121                       1    defaults
openpyxl                  2.4.8            py27h9f0c937_1    defaults
openssl                   1.0.2p               h470a237_1    conda-forge
packaging                 16.8             py27h5e07c7c_1    defaults
pandas                    0.23.4           py27hf8a1672_0    conda-forge
pandoc                    1.19.2.1             hea2e7c5_1    defaults
pandocfilters             1.4.2            py27h428e1e5_1    defaults
pango                     1.41.0               hd475d92_0    defaults
parafly                   r2013_01_21                   1    bioconda
partd                     0.3.8            py27h4e55004_0    defaults
patchelf                  0.9                  hf79760b_2    defaults
path.py                   10.3.1           py27hc258cac_0    defaults
pathlib2                  2.3.0            py27h6e9d198_0    defaults
patsy                     0.4.1            py27hd1cf8c0_0    defaults
pcre                      8.41                 hc71a17e_0    defaults
pep8                      1.7.0            py27h444351c_0    defaults
perl                      5.26.2               h470a237_0    conda-forge
perl-app-cpanminus        1.7044                  pl526_1    bioconda
perl-carp                 1.38                    pl526_1    bioconda
perl-common-sense         3.74                    pl526_2    bioconda
perl-constant             1.33                    pl526_1    bioconda
perl-cpan-meta            2.120921                pl526_1    bioconda
perl-data-dumper          2.161                   pl526_2    bioconda
perl-dbi                  1.641                   pl526_2    bioconda
perl-digest-hmac          1.03                    pl526_2    bioconda
perl-encode-locale        1.05            pl526h470a237_5    bioconda
perl-exporter             5.72                    pl526_1    bioconda
perl-extutils-cbuilder    0.280230                pl526_1    bioconda
perl-extutils-makemaker   7.34                    pl526_0    bioconda
perl-extutils-manifest    1.70                    pl526_2    bioconda
perl-extutils-parsexs     3.35                    pl526_0    bioconda
perl-file-listing         6.04                    pl526_1    bioconda
perl-file-path            2.15                    pl526_0    bioconda
perl-file-temp            0.2304                  pl526_2    bioconda
perl-font-afm             1.20                    pl526_2    bioconda
perl-getopt-long          2.50                    pl526_1    bioconda
perl-html-entities-numbered 0.04                    pl526_1    bioconda
perl-html-formatter       2.14                          0    bioconda
perl-html-parser          3.72                    pl526_3    bioconda
perl-html-tagset          3.20                    pl526_2    bioconda
perl-html-tidy            1.56                    pl526_2    bioconda
perl-html-tree            5.07                    pl526_0    bioconda
perl-http-cookies         6.01                    pl526_1    bioconda
perl-http-daemon          6.01                    pl526_1    bioconda
perl-http-date            6.02                    pl526_2    bioconda
perl-http-message         6.11                    pl526_1    bioconda
perl-http-negotiate       6.01                    pl526_1    bioconda
perl-io-html              1.001                   pl526_2    bioconda
perl-io-socket-ssl        2.024                   pl526_1    bioconda
perl-ipc-cmd              1.02                    pl526_0    bioconda
perl-json                 2.90                    pl526_3    bioconda
perl-json-xs              2.34            pl526h2d50403_2    bioconda
perl-libwww-perl          6.15                    pl526_1    bioconda
perl-list-util            1.38                    pl526_1    bioconda
perl-locale-maketext-simple 0.21                    pl526_1    bioconda
perl-lwp-mediatypes       6.02                    pl526_2    bioconda
perl-mime-base64          3.15                    pl526_1    bioconda
perl-module-build         0.4224                  pl526_2    bioconda
perl-module-corelist      5.20180120              pl526_1    bioconda
perl-module-load          0.32                    pl526_1    bioconda
perl-module-load-conditional 0.68                    pl526_2    bioconda
perl-module-metadata      1.000019                pl526_1    bioconda
perl-net-http             6.09                    pl526_1    bioconda
perl-net-ssleay           1.84            pl526h9dad42d_1    bioconda
perl-ntlm                 1.09                    pl526_3    bioconda
perl-params-check         0.38                    pl526_1    bioconda
perl-parent               0.236                   pl526_1    bioconda
perl-perl-ostype          1.010                   pl526_1    bioconda
perl-scalar-list-utils    1.45            pl526h470a237_3    bioconda
perl-test-more            1.001002                pl526_1    bioconda
perl-text-abbrev          1.02                    pl526_0    bioconda
perl-text-parsewords      3.29                    pl526_3    bioconda
perl-threaded             5.22.0                       13    bioconda
perl-tie-ixhash           1.23                    pl526_2    bioconda
perl-types-serialiser     1.0                     pl526_2    bioconda
perl-uri                  1.71                    pl526_3    bioconda
perl-version              0.9924                  pl526_0    bioconda
perl-www-robotrules       6.02                    pl526_2    bioconda
perl-xml-parser           2.44                          4    bioconda
perl-xml-twig             3.49                          0    bioconda
perl-xml-xpathengine      0.14                    pl526_1    bioconda
perl-xsloader             0.24                    pl526_0    bioconda
pexpect                   4.2.1            py27hcf82287_0    defaults
pickleshare               0.7.4            py27h09770e1_0    defaults
pillow                    4.2.1            py27h7cd2321_0    defaults
pip                       9.0.1            py27hbf658b2_3    defaults
pixman                    0.34.0               h83dc358_2    defaults
pkginfo                   1.4.1            py27hee1a9ad_1    defaults
ply                       3.10             py27hd6d9ae5_0    defaults
prompt_toolkit            1.0.15           py27h1b593e1_0    defaults
psutil                    5.4.0            py27h7da3062_0    defaults
pthread-stubs             0.4                           0    conda-forge
ptyprocess                0.5.2            py27h4ccb14c_0    defaults
py                        1.4.34           py27he5894e4_1    defaults
pycairo                   1.13.3           py27hea6d626_0    defaults
pycodestyle               2.3.1            py27h904819d_0    defaults
pycosat                   0.6.3                    py27_0    conda-forge
pycparser                 2.18             py27hefa08c5_1    defaults
pycrypto                  2.6.1            py27h9abbf5c_1    defaults
pycurl                    7.43.0.1         py27hb7f436b_0    defaults
pyflakes                  1.6.0            py27h904a57d_0    defaults
pygments                  2.2.0            py27h4a8b6f5_0    defaults
pylint                    1.7.4            py27h6bc7935_0    defaults
pyodbc                    4.0.17           py27h7f7627d_0    defaults
pyopenssl                 17.2.0           py27h189ff3b_0    defaults
pyparsing                 2.2.0            py27hf1513f8_1    defaults
pyqt                      5.6.0            py27h4b1e83c_5    defaults
pysocks                   1.6.7            py27he2db6d2_1    defaults
pytables                  3.4.2            py27h1f7bffc_2    defaults
pytest                    3.2.1            py27h98000ae_1    defaults
python                    2.7.15                        0    conda-forge
python-dateutil           2.6.1            py27h4ca5741_1    defaults
pytz                      2017.2           py27hcac29fa_1    defaults
pywavelets                0.5.2            py27hecda097_0    defaults
pyyaml                    3.12             py27h2d70dd7_1    defaults
pyzmq                     16.0.2           py27h297844f_2    defaults
qt                        5.6.2               h974d657_12    defaults
qtawesome                 0.4.4            py27hd7914c3_0    defaults
qtconsole                 4.3.1            py27hc444b0d_0    defaults
qtpy                      1.3.1            py27h63d3751_0    defaults
r                         3.4.3                  mro343_0    r
r-boot                    1.3_20                 mro343_0    r
r-checkpoint              0.4.3                  mro343_0    r
r-class                   7.3_14                 mro343_0    r
r-cluster                 2.0.6                  mro343_0    r
r-codetools               0.2_15                 mro343_0    r
r-curl                    3.1                    mro343_0    r
r-deployrrserve           9.0.0                  mro343_0    r
r-doparallel              1.0.12                 mro343_0    r
r-foreach                 1.4.5                  mro343_0    r
r-foreign                 0.8_69                 mro343_0    r
r-iterators               1.0.9                  mro343_0    r
r-jsonlite                1.5                    mro343_0    r
r-kernsmooth              2.23_15                mro343_0    r
r-lattice                 0.20_35                mro343_0    r
r-mass                    7.3_47                 mro343_0    r
r-matrix                  1.2_12                 mro343_0    r
r-mgcv                    1.8_22                 mro343_0    r
r-microsoftr              3.4.3.0097             mro343_0    r
r-nlme                    3.1_131                mro343_0    r
r-nnet                    7.3_12                 mro343_0    r
r-png                     0.1_7                  mro343_0    r
r-r6                      2.2.2                  mro343_0    r
r-recommended             3.4.3                  mro343_0    r
r-revoioq                 8.0.9                  mro343_0    r
r-revomods                11.0.0                 mro343_0    r
r-revoutilsmath           10.0.1                 mro343_0    r
r-rpart                   4.1_11                 mro343_0    r
r-runit                   0.4.26                 mro343_0    r
r-spatial                 7.3_11                 mro343_0    r
r-survival                2.41_3                 mro343_0    r
readline                  7.0                           0    conda-forge
requests                  2.18.4           py27hc5b0589_1    defaults
rope                      0.10.5           py27hcb0a616_0    defaults
ruamel_yaml               0.11.14          py27h672d447_2    defaults
salmon                    0.10.1                        1    bioconda
samtools                  1.9                  h46bd0b3_0    bioconda
scandir                   1.6              py27hf7388dc_0    defaults
scikit-image              0.13.0           py27h06cb35d_1    defaults
scikit-learn              0.19.1           py27h445a80a_0    defaults
scipy                     0.19.1           py27h1edc525_3    defaults
seaborn                   0.8.0            py27h9d2aaa1_0    defaults
setuptools                36.5.0           py27h68b189e_0    defaults
simplegeneric             0.8.1            py27h19e43cd_0    defaults
singledispatch            3.4.0.3          py27h9bcb476_0    defaults
sip                       4.18.1           py27he9ba0ab_2    defaults
six                       1.11.0           py27h5f960f1_1    defaults
slclust                   02022010                      2    bioconda
snowballstemmer           1.2.1            py27h44e2768_0    defaults
sortedcollections         0.5.3            py27h135218e_0    defaults
sortedcontainers          1.5.7            py27he59936f_0    defaults
sphinx                    1.6.3            py27hf9b1778_0    defaults
sphinxcontrib             1.0              py27h1512b58_1    defaults
sphinxcontrib-websupport  1.0.1            py27hf906f22_1    defaults
spyder                    3.2.4            py27h04a3490_0    defaults
sqlalchemy                1.1.13           py27hb0a01da_0    defaults
sqlite                    3.20.1               h6d8b0f3_1    defaults
sra-tools                 2.9.1_1              h470a237_0    bioconda
ssl_match_hostname        3.5.0.1          py27h4ec10b9_2    defaults
statsmodels               0.8.0            py27hc87d62d_0    defaults
subprocess32              3.2.7            py27h373dbce_0    defaults
sympy                     1.1.1            py27hc28188a_0    defaults
tbb                       2018_20171205                 0    conda-forge
tblib                     1.3.2            py27h51fe5ba_0    defaults
terminado                 0.6              py27h4be8df9_0    defaults
testpath                  0.3.1            py27hc38d2c4_0    defaults
tidyp                     1.04                          1    bioconda
tk                        8.6.7                h5979e9b_1    defaults
toolz                     0.8.2            py27hd3b1e7e_0    defaults
tornado                   4.5.2            py27h97b179f_0    defaults
traitlets                 4.3.2            py27hd6ce930_0    defaults
trimmomatic               0.38                          0    bioconda
trinity                   2.6.6                         2    bioconda
typing                    3.6.2            py27h66f49e2_0    defaults
unicodecsv                0.14.1           py27h5062da9_0    defaults
unixodbc                  2.3.4                hc36303a_1    defaults
urllib3                   1.22             py27ha55213b_0    defaults
wcwidth                   0.1.7            py27h9e3e1ab_0    defaults
webencodings              0.5.1            py27hff10b21_1    defaults
werkzeug                  0.12.2           py27hbf75dff_0    defaults
wheel                     0.29.0           py27h411dd7b_1    defaults
widgetsnbextension        3.0.2            py27hcb77dec_1    defaults
wrapt                     1.10.11          py27h04f6869_0    defaults
xlrd                      1.1.0            py27ha77178f_1    defaults
xlsxwriter                1.0.2            py27h12cbc6b_0    defaults
xlwt                      1.3.0            py27h3d85d97_0    defaults
xz                        5.2.3                h2bcbf08_1    defaults
yaml                      0.1.7                h96e3832_1    defaults
zeromq                    4.2.2                hb0b69da_1    defaults
zict                      0.1.3            py27h12c336c_0    defaults
zlib                      1.2.11               hfbfcf68_1    defaults
msarahan commented 5 years ago

file an issue on bioconda. This repo is for the "defaults" channel only.

wrpearson commented 5 years ago

Could you give me a link that might indicate how to do this? I looked, and did not find a way to report bioconda bugs. Thanks.

csoja commented 5 years ago

https://github.com/bioconda - probably https://github.com/bioconda/bioconda-recipes would be your best bet.