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Anaconda issue tracking
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Can't install package sodium on rstudio #10327

Open smith01s opened 5 years ago

smith01s commented 5 years ago

I can't install sodium when using rstudio installed from miniconda.

Can you help? I have installed libsodium-dev (sudo apt install libsodium-dev)

R version 3.5.1 (2018-07-02) -- "Feather Spray" Copyright (C) 2018 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit)

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Using the Intel MKL for parallel mathematical computing (using 4 cores).

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install.packages('sodium') % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 478k 100 478k 0 0 367k 0 0:00:01 0:00:01 --:--:-- 367k

  • installing source package ‘sodium’ ... ** package ‘sodium’ successfully unpacked and MD5 sums checked Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lsodium ------------------------- ANTICONF ERROR --------------------------- Configuration failed because libsodium was not found. Try installing:
  • deb: libsodium-dev (Debian, Ubuntu, etc)
  • rpm: libsodium-devel (Fedora, EPEL)
  • csw: libsodium_dev (Solaris)

  • brew: libsodium (OSX) If libsodium is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libsodium.pc file. If pkg-config is unavailable you can set INCLUDE_DIR and LIB_DIR manually via: R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'

    ERROR: configuration failed for package ‘sodium’

  • removing ‘/home/FDSL/smith01s/miniconda3/envs/rstudio/lib/R/library/sodium’ Warning in install.packages : installation of package ‘sodium’ had non-zero exit status

The downloaded source packages are in ‘/tmp/RtmpkZOve2/downloaded_packages’ Updating HTML index of packages in '.Library' Making 'packages.html' ... done

mingwandroid commented 5 years ago

Please try with conda install libsodium instead.

smith01s commented 5 years ago

Thank you so much for getting back to me. That worked great for sodium. However I needed sodium to support the keyring library (so I can store db credentials in my keyring).

install.packages('keyring') fails as I don't have access to libsecret.

I have executed:

sudo apt install libsecret-1-dev

But my rstudio env cannot see the libsecret-1.so.0.0.0 file.

I have copied it into /miniconda3/envs/rstudio/lib/R/lib and the install.packages('keyring') now works.

Can we have a conda install libsecret like we have conda install libsodium?