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batchelor package could not be installed #11870

Closed KoichiHashikawa closed 4 years ago

KoichiHashikawa commented 4 years ago

Actual Behavior

conda install -c bioconda bioconductor-batchelor gave an error. UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package tk conflicts for: bioconductor-batchelor -> r-base[version='>=3.6,<3.7.0a0'] -> tk[version='>=8.6.10,<8.7.0a0|>=8.6.8,<8.7.0a0'] python=3.7 -> tk[version='>=8.6.7,<8.7.0a0|>=8.6.8,<8.7.0a0']

Package ncurses conflicts for: python=3.7 -> readline[version='>=7.0,<8.0a0'] -> ncurses[version='6.0.*|>=6.0,<7.0a0'] python=3.7 -> ncurses[version='>=6.1,<7.0a0|>=6.2,<7.0a0']

Expected Behavior

successful installation

Steps to Reproduce

conda install -c bioconda bioconductor-batchelor at terminal using latest conda. (Rversion 3.6.3)

Anaconda or Miniconda version:
Operating System:
conda info
active environment : KR active env location : /home/garret/anaconda3/envs/KR shell level : 2 user config file : /home/garret/.condarc populated config files : /home/garret/.condarc conda version : 4.8.2 conda-build version : 3.18.11 python version : 3.7.6.final.0 virtual packages : __glibc=2.27 base environment : /home/garret/anaconda3 (writable) channel URLs : https://repo.anaconda.com/pkgs/main/linux-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/linux-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /home/garret/anaconda3/pkgs /home/garret/.conda/pkgs envs directories : /home/garret/anaconda3/envs /home/garret/.conda/envs platform : linux-64 user-agent : conda/4.8.2 requests/2.22.0 CPython/3.7.6 Linux/4.15.0-106-generic ubuntu/18.04.2 glibc/2.27 UID:GID : 1000:1000 netrc file : None offline mode : False ``` PASTE OUTPUT HERE: ```
conda list --show-channel-urls
``` PASTE OUTPUT HERE: # packages in environment at /home/garret/anaconda3/envs/KR: # # Name Version Build Channel _libgcc_mutex 0.1 main _r-mutex 1.0.0 anacondar_1 attrs 19.3.0 py_0 backcall 0.1.0 py37_0 binutils_impl_linux-64 2.31.1 h6176602_1 binutils_linux-64 2.31.1 h6176602_9 bioconductor-biocgenerics 0.32.0 r36_0 bioconda bioconductor-delayedarray 0.4.1 r342hdc491fa_0 biobuilds bioconductor-iranges 2.20.0 r36h516909a_0 bioconda bioconductor-s4vectors 0.24.0 r36h516909a_0 bioconda bleach 3.1.4 py_0 boost-cpp 1.72.0 h8e57a91_0 conda-forge bwidget 1.9.11 1 bzip2 1.0.8 h7b6447c_0 ca-certificates 2020.4.5.2 hecda079_0 conda-forge cairo 1.16.0 hcf35c78_1003 conda-forge certifi 2020.4.5.2 py37hc8dfbb8_0 conda-forge cfitsio 3.470 h3eac812_5 conda-forge curl 7.69.1 hbc83047_0 decorator 4.4.2 py_0 defusedxml 0.6.0 py_0 entrypoints 0.3 py37_0 expat 2.2.9 he1b5a44_2 conda-forge fontconfig 2.13.1 h86ecdb6_1001 conda-forge freetype 2.9.1 h8a8886c_1 freexl 1.0.5 h14c3975_1002 conda-forge fribidi 1.0.5 h7b6447c_0 gcc_impl_linux-64 7.3.0 habb00fd_1 gcc_linux-64 7.3.0 h553295d_9 gdal 3.0.4 py37h4b180d9_10 conda-forge geos 3.8.1 he1b5a44_0 conda-forge geotiff 1.6.0 h05acad5_0 conda-forge gfortran_impl_linux-64 7.3.0 hdf63c60_1 gfortran_linux-64 7.3.0 h553295d_9 giflib 5.2.1 h516909a_2 conda-forge glib 2.63.1 h3eb4bd4_1 gmp 6.1.2 h6c8ec71_1 graphite2 1.3.13 h23475e2_0 gsl 2.6 h294904e_0 conda-forge gxx_impl_linux-64 7.3.0 hdf63c60_1 gxx_linux-64 7.3.0 h553295d_9 harfbuzz 2.4.0 h9f30f68_3 conda-forge hdf4 4.2.13 hf30be14_1003 conda-forge hdf5 1.10.6 nompi_h3c11f04_100 conda-forge icu 64.2 he1b5a44_1 conda-forge importlib-metadata 1.6.0 py37_0 importlib_metadata 1.6.0 0 ipykernel 5.1.4 py37h39e3cac_0 ipython 7.13.0 py37h5ca1d4c_0 ipython_genutils 0.2.0 py37_0 jedi 0.17.0 py37_0 jinja2 2.11.2 py_0 jpeg 9d h516909a_0 conda-forge json-c 0.13.1 hbfbb72e_1002 conda-forge jsonschema 3.2.0 py37_0 jupyter_client 6.1.3 py_0 jupyter_core 4.6.3 py37_0 kealib 1.4.13 h33137a7_1 conda-forge krb5 1.17.1 h173b8e3_0 ld_impl_linux-64 2.33.1 h53a641e_7 libblas 3.8.0 14_openblas conda-forge libcblas 3.8.0 14_openblas conda-forge libcurl 7.69.1 h20c2e04_0 libdap4 3.20.6 h1d1bd15_0 conda-forge libedit 3.1.20181209 hc058e9b_0 libffi 3.3 he6710b0_1 libgcc-ng 9.1.0 hdf63c60_0 libgdal 3.0.4 he6a97d6_10 conda-forge libgfortran-ng 7.3.0 hdf63c60_0 libiconv 1.15 h516909a_1006 conda-forge libkml 1.3.0 hb574062_1011 conda-forge liblapack 3.8.0 14_openblas conda-forge libnetcdf 4.7.4 nompi_h84807e1_104 conda-forge libopenblas 0.3.7 h5ec1e0e_6 conda-forge libpng 1.6.37 hbc83047_0 libpq 12.2 h5513abc_1 conda-forge libsodium 1.0.16 h1bed415_0 libspatialite 4.3.0a h2482549_1038 conda-forge libssh2 1.9.0 h1ba5d50_1 libstdcxx-ng 9.1.0 hdf63c60_0 libtiff 4.1.0 h2733197_1 libuuid 2.32.1 h14c3975_1000 conda-forge libwebp-base 1.1.0 h516909a_3 conda-forge libxcb 1.13 h1bed415_1 libxml2 2.9.10 hee79883_0 conda-forge lz4-c 1.9.2 he6710b0_0 make 4.2.1 h1bed415_1 markupsafe 1.1.1 py37h7b6447c_0 mistune 0.8.4 py37h7b6447c_0 nbconvert 5.6.1 py37_0 nbformat 5.0.6 py_0 ncurses 6.2 he6710b0_1 notebook 6.0.3 py37_0 numpy 1.18.5 py37h8960a57_0 conda-forge openjdk 8.0.192 h516909a_1005 conda-forge openjpeg 2.3.1 h981e76c_3 conda-forge openssl 1.1.1g h516909a_0 conda-forge pandoc 2.2.3.2 0 pandocfilters 1.4.2 py37_1 pango 1.42.4 ha030887_1 conda-forge parso 0.7.0 py_0 pcre 8.44 he1b5a44_0 conda-forge pexpect 4.8.0 py37_0 pickleshare 0.7.5 py37_0 pip 20.0.2 py37_3 pixman 0.38.0 h7b6447c_0 poppler 0.87.0 h4190859_1 conda-forge poppler-data 0.4.9 1 conda-forge postgresql 12.2 h8573dbc_1 conda-forge proj 7.0.0 h966b41f_4 conda-forge prometheus_client 0.7.1 py_0 prompt-toolkit 3.0.5 py_0 prompt_toolkit 3.0.5 0 ptyprocess 0.6.0 py37_0 pygments 2.6.1 py_0 pyrsistent 0.16.0 py37h7b6447c_0 python 3.7.7 hcff3b4d_5 python-dateutil 2.8.1 py_0 python_abi 3.7 1_cp37m conda-forge pyzmq 18.1.1 py37he6710b0_0 r-askpass 1.0 r36h14c3975_0 r-assertthat 0.2.1 r36h6115d3f_0 r-backports 1.1.4 r36h96ca727_0 r-base 3.6.3 h316533a_2 conda-forge r-base64enc 0.1_3 r36h96ca727_4 r-bh 1.69.0_1 r36h6115d3f_0 r-boot 1.3_20 r36h6115d3f_0 r-broom 0.5.2 r36h6115d3f_0 r-callr 3.2.0 r36h6115d3f_0 r-caret 6.0_83 r36h96ca727_0 r-cellranger 1.1.0 r36h6115d3f_0 r-class 7.3_15 r36h96ca727_0 r-classint 0.4_3 r36h9bbef5b_1 conda-forge r-cli 1.1.0 r36h6115d3f_0 r-clipr 0.6.0 r36h6115d3f_0 r-clisymbols 1.2.0 r36h6115d3f_1003 conda-forge r-cluster 2.0.8 r36ha65eedd_0 r-coda 0.19_3 r36h6115d3f_2 conda-forge r-codetools 0.2_16 r36h6115d3f_0 r-colorspace 1.4_1 r36h96ca727_0 r-crayon 1.3.4 r36h6115d3f_0 r-curl 4.3 r36hcdcec82_1 conda-forge r-data.table 1.12.2 r36h96ca727_0 r-dbi 1.0.0 r36h6115d3f_0 r-dbplyr 1.4.0 r36h6115d3f_0 r-deldir 0.1_25 r36h9bbef5b_1 conda-forge r-desc 1.2.0 r36h6115d3f_1003 conda-forge r-devtools 2.0.2 r36h6115d3f_0 r-dichromat 2.0_0 r36h6115d3f_4 r-digest 0.6.18 r36h96ca727_0 r-dplyr 0.8.0.1 r36h29659fb_0 r-e1071 1.7_3 r36h0357c0b_1 conda-forge r-ellipsis 0.1.0 r36h96ca727_0 r-essentials 3.6.0 r36_0 r-evaluate 0.13 r36h6115d3f_0 r-expm 0.999_4 r36hbf399a0_4 conda-forge r-fansi 0.4.0 r36h96ca727_0 r-forcats 0.4.0 r36h6115d3f_0 r-foreach 1.4.4 r36h6115d3f_0 r-foreign 0.8_71 r36h96ca727_0 r-formatr 1.6 r36h6115d3f_0 r-fs 1.2.7 r36h29659fb_0 r-gdata 2.18.0 r36h6115d3f_1003 conda-forge r-generics 0.0.2 r36h6115d3f_0 r-ggplot2 3.1.1 r36h6115d3f_0 r-gh 1.1.0 r36h6115d3f_1 conda-forge r-git2r 0.27.1 r36h7253d3a_0 conda-forge r-glmnet 2.0_16 r36ha65eedd_0 r-glue 1.3.1 r36h96ca727_0 r-gmodels 2.18.1 r36_1003 conda-forge r-gower 0.2.0 r36h96ca727_0 r-gtable 0.3.0 r36h6115d3f_0 r-gtools 3.8.2 r36hcdcec82_1 conda-forge r-haven 2.1.0 r36h29659fb_0 r-hexbin 1.27.2 r36ha65eedd_0 r-highr 0.8 r36h6115d3f_0 r-hms 0.4.2 r36h6115d3f_0 r-htmltools 0.3.6 r36h29659fb_0 r-htmlwidgets 1.3 r36h6115d3f_0 r-httpuv 1.5.1 r36h29659fb_0 r-httr 1.4.0 r36h6115d3f_0 r-ini 0.3.1 r36h6115d3f_1003 conda-forge r-ipred 0.9_8 r36h96ca727_0 r-irdisplay 0.7.0 r36h6115d3f_0 r-irkernel 0.8.15 r36_0 r-irlba 2.3.3 r36h96ca727_0 r r-iterators 1.0.10 r36h6115d3f_0 r-jsonlite 1.6 r36h96ca727_0 r-kernsmooth 2.23_15 r36ha65eedd_4 r-knitr 1.22 r36h6115d3f_0 r-labeling 0.3 r36h6115d3f_4 r-later 0.8.0 r36h29659fb_0 r-lattice 0.20_38 r36h96ca727_0 r-lava 1.6.5 r36h6115d3f_0 r-lazyeval 0.2.2 r36h96ca727_0 r-learnbayes 2.15.1 r36h6115d3f_1002 conda-forge r-lubridate 1.7.4 r36h29659fb_0 r-magrittr 1.5 r36h6115d3f_4 r-maps 3.3.0 r36h96ca727_0 r-markdown 0.9 r36h96ca727_0 r-mass 7.3_51.3 r36h96ca727_0 r-matrix 1.2_18 r36h7fa42b6_3 conda-forge r-matrixstats 0.54.0 r36h96ca727_0 r-memoise 1.1.0 r36h6115d3f_1004 conda-forge r-mgcv 1.8_28 r36h96ca727_0 r-mime 0.6 r36h96ca727_0 r-modelmetrics 1.2.2 r36h29659fb_0 r-modelr 0.1.4 r36h6115d3f_0 r-munsell 0.5.0 r36h6115d3f_0 r-nlme 3.1_139 r36ha65eedd_0 r-nnet 7.3_12 r36h96ca727_0 r-numderiv 2016.8_1 r36h6115d3f_0 r-openssl 1.3 r36h96ca727_0 r-pbdzmq 0.3_3 r36h5455479_1 r-pillar 1.3.1 r36h6115d3f_0 r-pkgbuild 1.0.8 r36h6115d3f_0 conda-forge r-pkgconfig 2.0.2 r36h6115d3f_0 r-pkgload 1.1.0 r36h0357c0b_0 conda-forge r-plogr 0.2.0 r36h6115d3f_0 r-plyr 1.8.4 r36h29659fb_0 r-prettyunits 1.0.2 r36h6115d3f_0 r-processx 3.3.0 r36h96ca727_0 r-prodlim 2018.04.18 r36h29659fb_0 r-progress 1.2.0 r36h6115d3f_0 r-promises 1.0.1 r36h29659fb_0 r-ps 1.3.0 r36h96ca727_0 r-purrr 0.3.2 r36h96ca727_0 r-quantmod 0.4_14 r36h6115d3f_0 r-r6 2.4.0 r36h6115d3f_0 r-randomforest 4.6_14 r36ha65eedd_0 r-raster 3.1_5 r36h0357c0b_1 conda-forge r-rbokeh 0.6.3 r36_0 r-rcmdcheck 1.3.3 r36h6115d3f_3 conda-forge r-rcolorbrewer 1.1_2 r36h6115d3f_0 r-rcpp 1.0.1 r36h29659fb_0 r-rcpproll 0.3.0 r36h29659fb_0 r-readr 1.3.1 r36h29659fb_0 r-readxl 1.3.1 r36h29659fb_0 r-recipes 0.1.5 r36h6115d3f_0 r-recommended 3.6.0 r36_0 r-rematch 1.0.1 r36h6115d3f_0 r-remotes 2.1.1 r36h6115d3f_1 conda-forge r-repr 0.19.2 r36h6115d3f_0 r-reprex 0.2.1 r36h6115d3f_0 r-reshape2 1.4.3 r36h29659fb_0 r-rjava 0.9_12 r36hcdcec82_0 conda-forge r-rlang 0.3.4 r36h96ca727_0 r-rmarkdown 1.12 r36h6115d3f_0 r-rpart 4.1_15 r36h96ca727_0 r-rprojroot 1.3_2 r36h6115d3f_1003 conda-forge r-rstudioapi 0.10 r36h6115d3f_0 r-rvest 0.3.3 r36h6115d3f_0 r-scales 1.0.0 r36h29659fb_0 r-selectr 0.4_1 r36h6115d3f_0 r-sessioninfo 1.1.1 r36h6115d3f_1002 conda-forge r-sf 0.9_4 r36h72d0766_0 conda-forge r-shiny 1.3.2 r36h6115d3f_0 r-sourcetools 0.1.7 r36h29659fb_0 r-sp 1.4_2 r36hcdcec82_0 conda-forge r-spatial 7.3_11 r36h96ca727_4 r-spdata 0.3.5 r36h6115d3f_1 conda-forge r-spdep 1.1_3 r36hc57f18f_2 conda-forge r-squarem 2017.10_1 r36h6115d3f_0 r-stringi 1.4.3 r36h29659fb_0 r-stringr 1.4.0 r36h6115d3f_0 r-survival 2.44_1.1 r36h96ca727_0 r-sys 3.2 r36h96ca727_0 r-tibble 2.1.1 r36h96ca727_0 r-tidyr 0.8.3 r36h29659fb_0 r-tidyselect 0.2.5 r36h29659fb_0 r-tidyverse 1.2.1 r36h6115d3f_0 r-timedate 3043.102 r36h6115d3f_0 r-tinytex 0.12 r36h6115d3f_0 r-ttr 0.23_4 r36ha65eedd_0 r-units 0.6_7 r36h0357c0b_0 conda-forge r-usethis 1.5.0 r36h6115d3f_0 r-utf8 1.1.4 r36h96ca727_0 r-uuid 0.1_2 r36h96ca727_4 r-viridislite 0.3.0 r36h6115d3f_0 r-whisker 0.3_2 r36h6115d3f_4 r-withr 2.1.2 r36h6115d3f_0 r-xfun 0.6 r36h6115d3f_0 r-xlsx 0.6.1 r36h6115d3f_1 conda-forge r-xlsxjars 0.6.1 r36h6115d3f_2 conda-forge r-xml2 1.2.0 r36h29659fb_0 r-xopen 1.0.0 r36h6115d3f_1003 conda-forge r-xtable 1.8_4 r36h6115d3f_0 r-xts 0.11_2 r36h96ca727_0 r-yaml 2.2.0 r36h96ca727_0 r-zoo 1.8_6 r36h96ca727_0 readline 8.0 h7b6447c_0 sed 4.7 h1bed415_1000 conda-forge send2trash 1.5.0 py37_0 setuptools 47.1.1 py37_0 six 1.15.0 py_0 sqlite 3.31.1 h62c20be_1 tbb 2020.1 hc9558a2_0 conda-forge terminado 0.8.3 py37_0 testpath 0.4.4 py_0 tiledb 1.7.7 h8efa9f0_3 conda-forge tk 8.6.10 hed695b0_0 conda-forge tktable 2.10 h14c3975_0 tornado 6.0.4 py37h7b6447c_1 traitlets 4.3.3 py37_0 tzcode 2020a h516909a_0 conda-forge udunits2 2.2.27.6 h4e0c4b3_1001 conda-forge wcwidth 0.1.9 py_0 webencodings 0.5.1 py37_1 wheel 0.34.2 py37_0 xerces-c 3.2.2 h8412b87_1004 conda-forge xorg-kbproto 1.0.7 h14c3975_1002 conda-forge xorg-libice 1.0.10 h516909a_0 conda-forge xorg-libsm 1.2.3 h84519dc_1000 conda-forge xorg-libx11 1.6.9 h516909a_0 conda-forge xorg-libxext 1.3.4 h516909a_0 conda-forge xorg-libxrender 0.9.10 h516909a_1002 conda-forge xorg-renderproto 0.11.1 h14c3975_1002 conda-forge xorg-xextproto 7.3.0 h14c3975_1002 conda-forge xorg-xproto 7.0.31 h14c3975_1007 conda-forge xz 5.2.5 h7b6447c_0 zeromq 4.3.1 he6710b0_3 zipp 3.1.0 py_0 zlib 1.2.11 h7b6447c_3 zstd 1.4.4 h0b5b093_3 ```
jjhelmus commented 4 years ago

As this related to packages provided by bioconda not Anaconda you will need to ask for support from that community.