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Anaconda issue tracking
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Spyder 4.2.1 does not launch in Anaconda Navigator, on Big Sur Mac #12274

Open EkaterinaAbramova opened 3 years ago

EkaterinaAbramova commented 3 years ago

Actual Behavior

Expected Behavior

Steps to Reproduce

Anaconda or Miniconda version:
Operating System: Mac Big Sur
conda info
``` active environment : base active env location : /Users/NAME/opt/anaconda3 shell level : 1 user config file : /Users/NAME/.condarc populated config files : /Users/NAME/.condarc conda version : 4.9.2 conda-build version : 3.21.4 python version : 3.8.5.final.0 virtual packages : __osx=10.16=0 __unix=0=0 __archspec=1=x86_64 base environment : /Users/NAME/opt/anaconda3 (writable) channel URLs : https://repo.anaconda.com/pkgs/main/osx-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/osx-64 https://repo.anaconda.com/pkgs/r/noarch package cache : /Users/NAME/opt/anaconda3/pkgs /Users/NAME/.conda/pkgs envs directories : /Users/NAME/opt/anaconda3/envs /Users/NAME/.conda/envs platform : osx-64 user-agent : conda/4.9.2 requests/2.25.1 CPython/3.8.5 Darwin/20.2.0 OSX/10.16 UID:GID : 501:20 netrc file : None offline mode : False ```
conda list --show-channel-urls
``` # packages in environment at /Users/NAME/opt/anaconda3: # # Name Version Build Channel _anaconda_depends 2020.07 py38_0 defaults _ipyw_jlab_nb_ext_conf 0.1.0 py38_0 defaults alabaster 0.7.12 pyhd3eb1b0_0 defaults anaconda custom py38_1 defaults anaconda-client 1.7.2 py38_0 defaults anaconda-navigator 1.10.0 py38_0 defaults anaconda-project 0.9.1 pyhd3eb1b0_1 defaults appdirs 1.4.4 py_0 defaults applaunchservices 0.2.1 py_0 defaults appnope 0.1.2 py38hecd8cb5_1001 defaults appscript 1.1.2 py38h9ed2024_0 defaults argh 0.26.2 py38_0 defaults argon2-cffi 20.1.0 py38h9ed2024_1 defaults asn1crypto 1.4.0 py_0 defaults astroid 2.4.2 py38_0 defaults astropy 4.2 py38h9ed2024_0 defaults async_generator 1.10 py_0 defaults atomicwrites 1.4.0 py_0 defaults attrs 20.3.0 pyhd3eb1b0_0 defaults autopep8 1.5.4 py_0 defaults babel 2.9.0 pyhd3eb1b0_0 defaults backcall 0.2.0 pyhd3eb1b0_0 defaults backports 1.0 pyhd3eb1b0_2 defaults backports.functools_lru_cache 1.6.1 pyhd3eb1b0_0 defaults backports.shutil_get_terminal_size 1.0.0 pyhd3eb1b0_3 defaults backports.tempfile 1.0 pyhd3eb1b0_1 defaults backports.weakref 1.0.post1 py_1 defaults beautifulsoup4 4.9.3 pyha847dfd_0 defaults bitarray 1.6.3 py38h9ed2024_1 defaults bkcharts 0.2 py38_0 defaults black 19.10b0 py_0 defaults blas 1.0 mkl defaults bleach 3.3.0 pyhd3eb1b0_0 defaults blosc 1.20.1 hab81aa3_0 defaults bokeh 2.2.3 py38_0 defaults boto 2.49.0 py38_0 defaults bottleneck 1.3.2 py38hf1fa96c_1 defaults brotlipy 0.7.0 py38h9ed2024_1003 defaults bzip2 1.0.8 h1de35cc_0 defaults ca-certificates 2021.1.19 hecd8cb5_0 defaults certifi 2020.12.5 py38hecd8cb5_0 defaults cffi 1.14.4 py38h2125817_0 defaults chardet 4.0.0 py38hecd8cb5_1003 defaults click 7.1.2 pyhd3eb1b0_0 defaults cloudpickle 1.6.0 py_0 defaults clyent 1.2.2 py38_1 defaults colorama 0.4.4 pyhd3eb1b0_0 defaults conda 4.9.2 py38hecd8cb5_0 defaults conda-build 3.21.4 py38hecd8cb5_0 defaults conda-env 2.6.0 1 defaults conda-package-handling 1.7.2 py38h22f3db7_0 defaults conda-verify 3.4.2 py_1 defaults contextlib2 0.6.0.post1 py_0 defaults cryptography 3.3.1 py38hbcfaee0_0 defaults curl 7.71.1 hb0a8c7a_1 defaults cycler 0.10.0 py38_0 defaults cython 0.29.21 py38h23ab428_0 defaults cytoolz 0.11.0 py38haf1e3a3_0 defaults dask 2021.1.1 pyhd3eb1b0_0 defaults dask-core 2021.1.1 pyhd3eb1b0_0 defaults dbus 1.13.18 h18a8e69_0 defaults decorator 4.4.2 pyhd3eb1b0_0 defaults defusedxml 0.6.0 pyhd3eb1b0_0 defaults diff-match-patch 20200713 py_0 defaults distributed 2021.1.1 py38hecd8cb5_1 defaults docutils 0.16 py38_1 defaults entrypoints 0.3 py38_0 defaults et_xmlfile 1.0.1 py_1001 defaults expat 2.2.10 hb1e8313_2 defaults fastcache 1.1.0 py38h1de35cc_0 defaults filelock 3.0.12 pyhd3eb1b0_1 defaults flake8 3.8.4 py_0 defaults flask 1.1.2 pyhd3eb1b0_0 defaults freetype 2.10.4 ha233b18_0 defaults fsspec 0.8.3 py_0 defaults future 0.18.2 py38_1 defaults get_terminal_size 1.0.0 h7520d66_0 defaults gettext 0.19.8.1 hb0f4f8b_2 defaults gevent 21.1.1 py38h9ed2024_1 defaults glib 2.66.1 h9bbe63b_0 defaults glob2 0.7 pyhd3eb1b0_0 defaults gmp 6.2.1 h23ab428_2 defaults gmpy2 2.0.8 py38h6ef4df4_3 defaults greenlet 1.0.0 py38h23ab428_2 defaults h5py 2.10.0 py38h3134771_0 defaults hdf5 1.10.4 hfa1e0ec_0 defaults heapdict 1.0.1 py_0 defaults html5lib 1.1 py_0 defaults icu 58.2 h0a44026_3 defaults idna 2.10 pyhd3eb1b0_0 defaults imageio 2.9.0 py_0 defaults imagesize 1.2.0 pyhd3eb1b0_0 defaults importlib-metadata 2.0.0 py_1 defaults importlib_metadata 2.0.0 1 defaults iniconfig 1.1.1 pyhd3eb1b0_0 defaults intel-openmp 2019.4 233 defaults intervaltree 3.1.0 py_0 defaults ipykernel 5.3.4 py38h5ca1d4c_0 defaults ipython 7.20.0 py38h01d92e1_1 defaults ipython_genutils 0.2.0 pyhd3eb1b0_1 defaults ipywidgets 7.6.3 pyhd3eb1b0_1 defaults isort 5.7.0 pyhd3eb1b0_0 defaults itsdangerous 1.1.0 pyhd3eb1b0_0 defaults jbig 2.1 h4d881f8_0 defaults jdcal 1.4.1 py_0 defaults jedi 0.17.2 py38hecd8cb5_1 defaults jinja2 2.11.3 pyhd3eb1b0_0 defaults joblib 1.0.0 pyhd3eb1b0_0 defaults jpeg 9b he5867d9_2 defaults json5 0.9.5 py_0 defaults jsonschema 3.2.0 py_2 defaults jupyter 1.0.0 py38_7 defaults jupyter_client 6.1.7 py_0 defaults jupyter_console 6.2.0 py_0 defaults jupyter_core 4.7.1 py38hecd8cb5_0 defaults jupyterlab 2.2.6 py_0 defaults jupyterlab_pygments 0.1.2 py_0 defaults jupyterlab_server 1.2.0 py_0 defaults jupyterlab_widgets 1.0.0 pyhd3eb1b0_1 defaults keyring 22.0.1 py38hecd8cb5_0 defaults kiwisolver 1.3.1 py38h23ab428_0 defaults krb5 1.18.2 h75d18d8_0 defaults lazy-object-proxy 1.4.3 py38h9ed2024_2 defaults lcms2 2.11 h92f6f08_0 defaults libarchive 3.4.2 haa3ed63_0 defaults libcurl 7.71.1 h8a08a2b_1 defaults libcxx 10.0.0 1 defaults libedit 3.1.20191231 h1de35cc_1 defaults libffi 3.3 hb1e8313_2 defaults libgfortran 3.0.1 h93005f0_2 defaults libiconv 1.16 h1de35cc_0 defaults liblief 0.10.1 h0a44026_0 defaults libllvm10 10.0.1 h76017ad_5 defaults libllvm9 9.0.1 h21ff451_1 defaults libpng 1.6.37 ha441bb4_0 defaults libsodium 1.0.18 h1de35cc_0 defaults libspatialindex 1.9.3 h0a44026_0 defaults libssh2 1.9.0 ha12b0ac_1 defaults libtiff 4.1.0 hcb84e12_1 defaults libxml2 2.9.10 h7cdb67c_3 defaults libxslt 1.1.34 h83b36ba_0 defaults llvm-openmp 10.0.0 h28b9765_0 defaults llvmlite 0.34.0 py38h739e7dc_4 defaults locket 0.2.1 py38hecd8cb5_1 defaults lxml 4.6.2 py38h26b266a_0 defaults lz4-c 1.9.3 h23ab428_0 defaults lzo 2.10 haf1e3a3_2 defaults markupsafe 1.1.1 py38h1de35cc_1 defaults matplotlib 3.3.2 hecd8cb5_0 defaults matplotlib-base 3.3.2 py38h181983e_0 defaults mccabe 0.6.1 py38_1 defaults mistune 0.8.4 py38h1de35cc_1001 defaults mkl 2019.4 233 defaults mkl-service 2.3.0 py38h9ed2024_0 defaults mkl_fft 1.2.0 py38hc64f4ea_0 defaults mkl_random 1.1.1 py38h959d312_0 defaults mock 4.0.3 pyhd3eb1b0_0 defaults more-itertools 8.6.0 pyhd3eb1b0_0 defaults mpc 1.1.0 h6ef4df4_1 defaults mpfr 4.0.2 h9066e36_1 defaults mpmath 1.1.0 py38_0 defaults msgpack-python 1.0.2 py38hf7b0b51_1 defaults multipledispatch 0.6.0 py38_0 defaults mypy_extensions 0.4.3 py38_0 defaults navigator-updater 0.2.1 py38_0 defaults nbclient 0.5.1 py_0 defaults nbconvert 6.0.7 py38_0 defaults nbformat 5.1.2 pyhd3eb1b0_1 defaults ncurses 6.2 h0a44026_1 defaults nest-asyncio 1.4.2 pyhd3eb1b0_0 defaults networkx 2.5 py_0 defaults nltk 3.5 py_0 defaults nose 1.3.7 pyhd3eb1b0_1006 defaults notebook 6.2.0 py38hecd8cb5_0 defaults numba 0.51.2 py38h6440ff4_1 defaults numexpr 2.7.2 py38h16bde0e_0 defaults numpy 1.19.2 py38h456fd55_0 defaults numpy-base 1.19.2 py38hcfb5961_0 defaults numpydoc 1.1.0 pyhd3eb1b0_1 defaults olefile 0.46 py_0 defaults openpyxl 3.0.6 pyhd3eb1b0_0 defaults openssl 1.1.1i h9ed2024_0 defaults packaging 20.9 pyhd3eb1b0_0 defaults pandas 1.2.1 py38hb2f4e1b_0 defaults pandoc 2.11 h0dc7051_0 defaults pandocfilters 1.4.3 py38hecd8cb5_1 defaults parso 0.7.0 py_0 defaults partd 1.1.0 py_0 defaults path 15.1.0 py38hecd8cb5_0 defaults path.py 12.5.0 0 defaults pathlib2 2.3.5 py38hecd8cb5_2 defaults pathspec 0.7.0 py_0 defaults pathtools 0.1.2 py_1 defaults patsy 0.5.1 py38_0 defaults pcre 8.44 hb1e8313_0 defaults pep8 1.7.1 py38_0 defaults pexpect 4.8.0 pyhd3eb1b0_3 defaults pickleshare 0.7.5 pyhd3eb1b0_1003 defaults pillow 8.1.0 py38h5270095_0 defaults pip 20.3.3 py38hecd8cb5_0 defaults pkginfo 1.7.0 py38hecd8cb5_0 defaults pluggy 0.13.1 py38_0 defaults ply 3.11 py38_0 defaults prometheus_client 0.9.0 pyhd3eb1b0_0 defaults prompt-toolkit 3.0.8 py_0 defaults prompt_toolkit 3.0.8 0 defaults psutil 5.8.0 py38h9ed2024_1 defaults ptyprocess 0.7.0 pyhd3eb1b0_2 defaults py 1.10.0 pyhd3eb1b0_0 defaults py-lief 0.10.1 py38haf313ee_0 defaults pycodestyle 2.6.0 pyhd3eb1b0_0 defaults pycosat 0.6.3 py38h1de35cc_1 defaults pycparser 2.20 py_2 defaults pycurl 7.43.0.6 py38hddc9c9b_0 defaults pydocstyle 5.1.1 py_0 defaults pyerfa 1.7.1.1 py38h9ed2024_1 defaults pyflakes 2.2.0 pyhd3eb1b0_0 defaults pygments 2.7.4 pyhd3eb1b0_0 defaults pylint 2.6.0 py38_0 defaults pyls-black 0.4.6 hd3eb1b0_0 defaults pyls-spyder 0.3.0 pyhd3eb1b0_0 defaults pyodbc 4.0.30 py38h0a44026_0 defaults pyopenssl 20.0.1 pyhd3eb1b0_1 defaults pyparsing 2.4.7 pyhd3eb1b0_0 defaults pyqt 5.9.2 py38h655552a_2 defaults pyrsistent 0.17.3 py38haf1e3a3_0 defaults pysocks 1.7.1 py38_1 defaults pytables 3.6.1 py38h4727e94_0 defaults pytest 6.2.2 py38hecd8cb5_2 defaults python 3.8.5 h26836e1_1 defaults python-dateutil 2.8.1 pyhd3eb1b0_0 defaults python-jsonrpc-server 0.4.0 py_0 defaults python-language-server 0.36.2 pyhd3eb1b0_0 defaults python-libarchive-c 2.9 pyhd3eb1b0_0 defaults python.app 3 py38h9ed2024_0 defaults pytz 2021.1 pyhd3eb1b0_0 defaults pywavelets 1.1.1 py38haf1e3a3_2 defaults pyyaml 5.4.1 py38h9ed2024_1 defaults pyzmq 20.0.0 py38h23ab428_1 defaults qdarkstyle 2.8.1 py_0 defaults qt 5.9.7 h468cd18_1 defaults qtawesome 1.0.1 py_0 defaults qtconsole 5.0.2 pyhd3eb1b0_0 defaults qtpy 1.9.0 py_0 defaults readline 8.1 h9ed2024_0 defaults regex 2020.11.13 py38h9ed2024_0 defaults requests 2.25.1 pyhd3eb1b0_0 defaults ripgrep 12.1.1 0 defaults rope 0.18.0 py_0 defaults rtree 0.9.4 py38_1 defaults ruamel_yaml 0.15.87 py38haf1e3a3_1 defaults scikit-image 0.17.2 py38h81aa140_0 defaults scikit-learn 0.23.2 py38h959d312_0 defaults scipy 1.6.0 py38h2515648_0 defaults seaborn 0.11.1 pyhd3eb1b0_0 defaults send2trash 1.5.0 pyhd3eb1b0_1 defaults setuptools 52.0.0 py38hecd8cb5_0 defaults simplegeneric 0.8.1 py38_2 defaults singledispatch 3.4.0.3 py_1001 defaults sip 4.19.8 py38h0a44026_0 defaults six 1.15.0 py38hecd8cb5_0 defaults snappy 1.1.8 hb1e8313_0 defaults snowballstemmer 2.1.0 pyhd3eb1b0_0 defaults sortedcollections 2.1.0 pyhd3eb1b0_0 defaults sortedcontainers 2.3.0 pyhd3eb1b0_0 defaults soupsieve 2.1 pyhd3eb1b0_0 defaults sphinx 3.4.3 pyhd3eb1b0_0 defaults sphinxcontrib 1.0 py38_1 defaults sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0 defaults sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0 defaults sphinxcontrib-htmlhelp 1.0.3 pyhd3eb1b0_0 defaults sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0 defaults sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0 defaults sphinxcontrib-serializinghtml 1.1.4 pyhd3eb1b0_0 defaults sphinxcontrib-websupport 1.2.4 py_0 defaults spyder 4.2.1 py38hecd8cb5_1 defaults spyder-kernels 1.10.1 py38hecd8cb5_0 defaults sqlalchemy 1.3.23 py38h9ed2024_0 defaults sqlite 3.33.0 hffcf06c_0 defaults statsmodels 0.12.1 py38h9ed2024_0 defaults sympy 1.7.1 py38hecd8cb5_0 defaults tbb 2020.3 h879752b_0 defaults tblib 1.7.0 py_0 defaults terminado 0.9.2 py38hecd8cb5_0 defaults testpath 0.4.4 pyhd3eb1b0_0 defaults textdistance 4.2.1 pyhd3eb1b0_0 defaults threadpoolctl 2.1.0 pyh5ca1d4c_0 defaults three-merge 0.1.1 pyhd3eb1b0_0 defaults tifffile 2020.10.1 py38h0cf3a3e_2 defaults tk 8.6.10 hb0a8c7a_0 defaults toml 0.10.1 py_0 defaults toolz 0.11.1 pyhd3eb1b0_0 defaults tornado 6.1 py38h9ed2024_0 defaults tqdm 4.56.0 pyhd3eb1b0_0 defaults traitlets 5.0.5 pyhd3eb1b0_0 defaults typed-ast 1.4.2 py38h9ed2024_1 defaults typing_extensions 3.7.4.3 pyha847dfd_0 defaults ujson 4.0.2 py38h23ab428_0 defaults unicodecsv 0.14.1 py38_0 defaults unixodbc 2.3.9 haf1e3a3_0 defaults urllib3 1.26.3 pyhd3eb1b0_0 defaults watchdog 1.0.2 py38h9ed2024_1 defaults wcwidth 0.2.5 py_0 defaults webencodings 0.5.1 py38_1 defaults werkzeug 1.0.1 pyhd3eb1b0_0 defaults wheel 0.36.2 pyhd3eb1b0_0 defaults widgetsnbextension 3.5.1 py38_0 defaults wrapt 1.11.2 py38h9ed2024_0 defaults wurlitzer 2.0.1 py38_0 defaults xlrd 2.0.1 pyhd3eb1b0_0 defaults xlsxwriter 1.3.7 pyhd3eb1b0_0 defaults xlwings 0.22.0 py38hecd8cb5_0 defaults xlwt 1.3.0 py38_0 defaults xmltodict 0.12.0 py_0 defaults xz 5.2.5 h1de35cc_0 defaults yaml 0.2.5 haf1e3a3_0 defaults yapf 0.30.0 py_0 defaults zeromq 4.3.3 hb1e8313_3 defaults zict 2.0.0 pyhd3eb1b0_0 defaults zipp 3.4.0 pyhd3eb1b0_0 defaults zlib 1.2.11 h1de35cc_3 defaults zope 1.0 py38_1 defaults zope.event 4.5.0 py38_0 defaults zope.interface 5.2.0 py38h9ed2024_0 defaults zstd 1.4.5 h41d2c2f_0 defaults ```
Hlaejanor commented 3 years ago

This does not nescessarily apply to BIg Sur, it happens to me on Catalina. Yesterday, I installed a macos update for Catalina, which probably caused this.

cjmartian commented 3 years ago

I'm running Big Sur and created a new environment: conda create -n testnav python=3.8 anaconda-navigator spyder=4.2.1 After activating it, I launched navigator: conda activate testnav anaconda-navigator I then launched spyder via the GUI and everything seemed to work as expected.

I'm running on conda 4.9.2