ContinuumIO / anaconda-issues

Anaconda issue tracking
646 stars 220 forks source link

Navigator update to 2.1.0 from 2.0.4 never finishes #12643

Open steveSchneider2 opened 2 years ago

steveSchneider2 commented 2 years ago

Thanks for opening an issue! Please fill out the following template in full.

A few things to keep in mind:

Actual Behavior

I open Navigator...it tells me there's an update available (via a window), but also in the upper right of the navigator window. i Say 'yes' (the mini-window says that Navigator will close (itself))... but actually, Navigator opens another mini-window allowing me to choose to close it). At this point i have Navigator AND two mini-windows open. I chose 'yes' and Navigator closes (along with its mini-window). Now, just the 'updater' window is open saying 'updating package on root...'. This stays open until i get tired of watching it, and want to get to work. I have waited an hour. And still it is there 'updating'.

Alternately, if i close the first window, saying i'll upgrade later... then, choose to update via the little 'upper-right' note on the navigator window itself... then, immediately I get the warning that a change might be made to the computer...i accept. The navigator window pops up saying 'update now?' ... Yes... another window pops up saying 'would you like to close Navigator?' ... yes. Navigator closes, and the 'updater' window goes into 'updating package on root...'. This then continues til i tire of watching it.

Expected Behavior

After a few minutes update should complete.

Steps to Reproduce

Close it all down. reopen navigator. I can then begin the process above.

Anaconda or Miniconda version:

2.0.4

Operating System: Windows 10
conda info
``` active environment : base active env location : C:\Users\steve\anaconda3 shell level : 1 user config file : C:\Users\steve\.condarc populated config files : C:\Users\steve\.condarc conda version : 4.10.3 conda-build version : 3.20.5 python version : 3.8.5.final.0 virtual packages : __cuda=11.4=0 __win=0=0 __archspec=1=x86_64 base environment : C:\Users\steve\anaconda3 (writable) conda av data dir : C:\Users\steve\anaconda3\etc\conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/win-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/win-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/msys2/win-64 https://repo.anaconda.com/pkgs/msys2/noarch https://conda.anaconda.org/conda-forge/win-64 https://conda.anaconda.org/conda-forge/noarch package cache : C:\Users\steve\anaconda3\pkgs C:\Users\steve\.conda\pkgs C:\Users\steve\AppData\Local\conda\conda\pkgs envs directories : C:\Users\steve\anaconda3\envs C:\Users\steve\.conda\envs C:\Users\steve\AppData\Local\conda\conda\envs platform : win-64 user-agent : conda/4.10.3 requests/2.24.0 CPython/3.8.5 Windows/10 Windows/10.0.19041 administrator : False netrc file : None offline mode : False ```
conda list --show-channel-urls
``` # packages in environment at C:\Users\steve\anaconda3: # # Name Version Build Channel _ipyw_jlab_nb_ext_conf 0.1.0 py38_0 defaults alabaster 0.7.12 py_0 defaults anaconda 2020.11 py38_0 defaults anaconda-client 1.7.2 py38_0 defaults anaconda-navigator 2.0.4 py38_0 defaults anaconda-project 0.8.4 py_0 defaults argh 0.26.2 py38_0 defaults argon2-cffi 20.1.0 py38he774522_1 defaults asn1crypto 1.4.0 py_0 defaults astroid 2.4.2 py38_0 defaults astropy 4.0.2 py38he774522_0 defaults async_generator 1.10 py_0 defaults atomicwrites 1.4.0 py_0 defaults attrs 20.3.0 pyhd3eb1b0_0 defaults autopep8 1.5.4 py_0 defaults babel 2.8.1 pyhd3eb1b0_0 defaults backcall 0.2.0 py_0 defaults backports 1.0 py_2 defaults backports.functools_lru_cache 1.6.1 py_0 defaults backports.shutil_get_terminal_size 1.0.0 py38_2 defaults backports.tempfile 1.0 py_1 defaults backports.weakref 1.0.post1 py_1 defaults bcrypt 3.2.0 py38he774522_0 defaults beautifulsoup4 4.9.3 pyhb0f4dca_0 defaults bitarray 1.6.1 py38h2bbff1b_0 defaults bkcharts 0.2 py38_0 defaults blas 1.0 mkl defaults bleach 3.2.1 py_0 defaults blosc 1.20.1 h7bd577a_0 defaults bokeh 2.2.3 py38_0 defaults boto 2.49.0 py38_0 defaults bottleneck 1.3.2 py38h2a96729_1 defaults brotlipy 0.7.0 py38he774522_1000 defaults bzip2 1.0.8 he774522_0 defaults ca-certificates 2020.10.14 0 defaults certifi 2020.6.20 pyhd3eb1b0_3 defaults cffi 1.14.3 py38h7a1dbc1_0 defaults chardet 3.0.4 py38_1003 defaults click 7.1.2 py_0 defaults cloudpickle 1.6.0 py_0 defaults clyent 1.2.2 py38_1 defaults colorama 0.4.4 py_0 defaults comtypes 1.1.7 py38_1001 defaults conda 4.10.3 py38haa244fe_0 conda-forge conda-build 3.20.5 py38_1 defaults conda-env 2.6.0 1 defaults conda-package-handling 1.7.2 py38h76e460a_0 defaults conda-repo-cli 1.0.3 pyhd3eb1b0_0 defaults conda-token 0.2.0 pyhd3eb1b0_0 defaults conda-verify 3.4.2 py_1 defaults console_shortcut 0.1.1 4 defaults contextlib2 0.6.0.post1 py_0 defaults cryptography 3.1.1 py38h7a1dbc1_0 defaults curl 7.71.1 h2a8f88b_1 defaults cycler 0.10.0 py38_0 defaults cython 0.29.21 py38ha925a31_0 defaults cytoolz 0.11.0 py38he774522_0 defaults dask 2.30.0 py_0 defaults dask-core 2.30.0 py_0 defaults decorator 4.4.2 py_0 defaults defusedxml 0.6.0 py_0 defaults diff-match-patch 20200713 py_0 defaults distributed 2.30.1 py38haa95532_0 defaults docutils 0.16 py38_1 defaults entrypoints 0.3 py38_0 defaults et_xmlfile 1.0.1 py_1001 defaults fastcache 1.1.0 py38he774522_0 defaults filelock 3.0.12 py_0 defaults flake8 3.8.4 py_0 defaults flask 1.1.2 py_0 defaults freetype 2.10.4 hd328e21_0 defaults fsspec 0.8.3 py_0 defaults future 0.18.2 py38_1 defaults get_terminal_size 1.0.0 h38e98db_0 defaults gevent 20.9.0 py38he774522_0 defaults glob2 0.7 py_0 defaults greenlet 0.4.17 py38he774522_0 defaults h5py 2.10.0 py38h5e291fa_0 defaults hdf5 1.10.4 h7ebc959_0 defaults heapdict 1.0.1 py_0 defaults html5lib 1.1 py_0 defaults icc_rt 2019.0.0 h0cc432a_1 defaults icu 58.2 ha925a31_3 defaults idna 2.10 py_0 defaults imageio 2.9.0 py_0 defaults imagesize 1.2.0 py_0 defaults importlib-metadata 2.0.0 py_1 defaults importlib_metadata 2.0.0 1 defaults iniconfig 1.1.1 py_0 defaults intel-openmp 2020.2 254 defaults intervaltree 3.1.0 py_0 defaults ipykernel 5.3.4 py38h5ca1d4c_0 defaults ipython 7.19.0 py38hd4e2768_0 defaults ipython_genutils 0.2.0 py38_0 defaults ipywidgets 7.5.1 py_1 defaults isort 5.6.4 py_0 defaults itsdangerous 1.1.0 py_0 defaults jdcal 1.4.1 py_0 defaults jedi 0.17.1 py38_0 defaults jinja2 2.11.2 py_0 defaults joblib 0.17.0 py_0 defaults jpeg 9b hb83a4c4_2 defaults json5 0.9.5 py_0 defaults jsonschema 3.2.0 py_2 defaults jupyter 1.0.0 py38_7 defaults jupyter_client 6.1.7 py_0 defaults jupyter_console 6.2.0 py_0 defaults jupyter_core 4.6.3 py38_0 defaults jupyterlab 2.2.6 py_0 defaults jupyterlab_pygments 0.1.2 py_0 defaults jupyterlab_server 1.2.0 py_0 defaults keyring 21.4.0 py38_1 defaults kiwisolver 1.3.0 py38hd77b12b_0 defaults krb5 1.18.2 hc04afaa_0 defaults lazy-object-proxy 1.4.3 py38he774522_0 defaults libarchive 3.4.2 h5e25573_0 defaults libcurl 7.71.1 h2a8f88b_1 defaults libiconv 1.15 h1df5818_7 defaults liblief 0.10.1 ha925a31_0 defaults libpng 1.6.37 h2a8f88b_0 defaults libsodium 1.0.18 h62dcd97_0 defaults libspatialindex 1.9.3 h33f27b4_0 defaults libssh2 1.9.0 h7a1dbc1_1 defaults libtiff 4.1.0 h56a325e_1 defaults libxml2 2.9.10 hb89e7f3_3 defaults libxslt 1.1.34 he774522_0 defaults llvmlite 0.34.0 py38h1a82afc_4 defaults locket 0.2.0 py38_1 defaults lxml 4.6.1 py38h1350720_0 defaults lz4-c 1.9.2 hf4a77e7_3 defaults lzo 2.10 he774522_2 defaults m2w64-gcc-libgfortran 5.3.0 6 defaults m2w64-gcc-libs 5.3.0 7 defaults m2w64-gcc-libs-core 5.3.0 7 defaults m2w64-gmp 6.1.0 2 defaults m2w64-libwinpthread-git 5.0.0.4634.697f757 2 defaults markupsafe 1.1.1 py38he774522_0 defaults matplotlib 3.3.2 0 defaults matplotlib-base 3.3.2 py38hba9282a_0 defaults mccabe 0.6.1 py38_1 defaults menuinst 1.4.16 py38he774522_1 defaults mistune 0.8.4 py38he774522_1000 defaults mkl 2020.2 256 defaults mkl-service 2.3.0 py38hb782905_0 defaults mkl_fft 1.2.0 py38h45dec08_0 defaults mkl_random 1.1.1 py38h47e9c7a_0 defaults mock 4.0.2 py_0 defaults more-itertools 8.6.0 pyhd3eb1b0_0 defaults mpmath 1.1.0 py38_0 defaults msgpack-python 1.0.0 py38h74a9793_1 defaults msys2-conda-epoch 20160418 1 defaults multipledispatch 0.6.0 py38_0 defaults navigator-updater 0.2.1 py38_0 defaults nbclient 0.5.1 py_0 defaults nbconvert 6.0.7 py38_0 defaults nbformat 5.0.8 py_0 defaults nest-asyncio 1.4.2 pyhd3eb1b0_0 defaults networkx 2.5 py_0 defaults nltk 3.5 py_0 defaults nose 1.3.7 py38_2 defaults notebook 6.1.4 py38_0 defaults numba 0.51.2 py38hf9181ef_1 defaults numexpr 2.7.1 py38h25d0782_0 defaults numpy 1.19.2 py38hadc3359_0 defaults numpy-base 1.19.2 py38ha3acd2a_0 defaults numpydoc 1.1.0 pyhd3eb1b0_1 defaults olefile 0.46 py_0 defaults openpyxl 3.0.5 py_0 defaults openssl 1.1.1h he774522_0 defaults packaging 20.4 py_0 defaults pandas 1.1.3 py38ha925a31_0 defaults pandoc 2.11 h9490d1a_0 defaults pandocfilters 1.4.3 py38haa95532_1 defaults paramiko 2.7.2 py_0 defaults parso 0.7.0 py_0 defaults partd 1.1.0 py_0 defaults path 15.0.0 py38_0 defaults path.py 12.5.0 0 defaults pathlib2 2.3.5 py38_0 defaults pathtools 0.1.2 py_1 defaults patsy 0.5.1 py38_0 defaults pep8 1.7.1 py38_0 defaults pexpect 4.8.0 py38_0 defaults pickleshare 0.7.5 py38_1000 defaults pillow 8.0.1 py38h4fa10fc_0 defaults pip 20.2.4 py38haa95532_0 defaults pkginfo 1.6.1 py38haa95532_0 defaults pluggy 0.13.1 py38_0 defaults ply 3.11 py38_0 defaults powershell_shortcut 0.0.1 3 defaults prometheus_client 0.8.0 py_0 defaults prompt-toolkit 3.0.8 py_0 defaults prompt_toolkit 3.0.8 0 defaults psutil 5.7.2 py38he774522_0 defaults py 1.9.0 py_0 defaults py-lief 0.10.1 py38ha925a31_0 defaults pycodestyle 2.6.0 py_0 defaults pycosat 0.6.3 py38he774522_0 defaults pycparser 2.20 py_2 defaults pycurl 7.43.0.6 py38h7a1dbc1_0 defaults pydocstyle 5.1.1 py_0 defaults pyflakes 2.2.0 py_0 defaults pygments 2.7.2 pyhd3eb1b0_0 defaults pylint 2.6.0 py38_0 defaults pynacl 1.4.0 py38h62dcd97_1 defaults pyodbc 4.0.30 py38ha925a31_0 defaults pyopenssl 19.1.0 py_1 defaults pyparsing 2.4.7 py_0 defaults pyqt 5.9.2 py38ha925a31_4 defaults pyreadline 2.1 py38_1 defaults pyrsistent 0.17.3 py38he774522_0 defaults pysocks 1.7.1 py38_0 defaults pytables 3.6.1 py38ha5be198_0 defaults pytest 6.1.1 py38_0 defaults python 3.8.5 h5fd99cc_1 defaults python-dateutil 2.8.1 py_0 defaults python-jsonrpc-server 0.4.0 py_0 defaults python-language-server 0.35.1 py_0 defaults python-libarchive-c 2.9 py_0 defaults python_abi 3.8 1_cp38 conda-forge pytz 2020.1 py_0 defaults pywavelets 1.1.1 py38he774522_2 defaults pywin32 227 py38he774522_1 defaults pywin32-ctypes 0.2.0 py38_1000 defaults pywinpty 0.5.7 py38_0 defaults pyyaml 5.3.1 py38he774522_1 defaults pyzmq 19.0.2 py38ha925a31_1 defaults qdarkstyle 2.8.1 py_0 defaults qt 5.9.7 vc14h73c81de_0 defaults qtawesome 1.0.1 py_0 defaults qtconsole 4.7.7 py_0 defaults qtpy 1.9.0 py_0 defaults regex 2020.10.15 py38he774522_0 defaults requests 2.24.0 py_0 defaults rope 0.18.0 py_0 defaults rtree 0.9.4 py38h21ff451_1 defaults ruamel_yaml 0.15.87 py38he774522_1 defaults scikit-image 0.17.2 py38h1e1f486_0 defaults scikit-learn 0.23.2 py38h47e9c7a_0 defaults scipy 1.5.2 py38h14eb087_0 defaults seaborn 0.11.0 py_0 defaults send2trash 1.5.0 py38_0 defaults setuptools 50.3.1 py38haa95532_1 defaults simplegeneric 0.8.1 py38_2 defaults singledispatch 3.4.0.3 py_1001 defaults sip 4.19.13 py38ha925a31_0 defaults six 1.15.0 py38haa95532_0 defaults snowballstemmer 2.0.0 py_0 defaults sortedcollections 1.2.1 py_0 defaults sortedcontainers 2.2.2 py_0 defaults soupsieve 2.0.1 py_0 defaults sphinx 3.2.1 py_0 defaults sphinxcontrib 1.0 py38_1 defaults sphinxcontrib-applehelp 1.0.2 py_0 defaults sphinxcontrib-devhelp 1.0.2 py_0 defaults sphinxcontrib-htmlhelp 1.0.3 py_0 defaults sphinxcontrib-jsmath 1.0.1 py_0 defaults sphinxcontrib-qthelp 1.0.3 py_0 defaults sphinxcontrib-serializinghtml 1.1.4 py_0 defaults sphinxcontrib-websupport 1.2.4 py_0 defaults spyder 4.1.5 py38_0 defaults spyder-kernels 1.9.4 py38_0 defaults sqlalchemy 1.3.20 py38h2bbff1b_0 defaults sqlite 3.33.0 h2a8f88b_0 defaults statsmodels 0.12.0 py38he774522_0 defaults sympy 1.6.2 py38haa95532_1 defaults tblib 1.7.0 py_0 defaults terminado 0.9.1 py38_0 defaults testpath 0.4.4 py_0 defaults threadpoolctl 2.1.0 pyh5ca1d4c_0 defaults tifffile 2020.10.1 py38h8c2d366_2 defaults tk 8.6.10 he774522_0 defaults toml 0.10.1 py_0 defaults toolz 0.11.1 py_0 defaults tornado 6.0.4 py38he774522_1 defaults tqdm 4.50.2 py_0 defaults traitlets 5.0.5 py_0 defaults typing_extensions 3.7.4.3 py_0 defaults ujson 4.0.1 py38ha925a31_0 defaults unicodecsv 0.14.1 py38_0 defaults urllib3 1.25.11 py_0 defaults vc 14.1 h0510ff6_4 defaults vs2015_runtime 14.16.27012 hf0eaf9b_3 defaults watchdog 0.10.3 py38_0 defaults wcwidth 0.2.5 py_0 defaults webencodings 0.5.1 py38_1 defaults werkzeug 1.0.1 py_0 defaults wheel 0.35.1 py_0 defaults widgetsnbextension 3.5.1 py38_0 defaults win_inet_pton 1.1.0 py38_0 defaults win_unicode_console 0.5 py38_0 defaults wincertstore 0.2 py38_0 defaults winpty 0.4.3 4 defaults wrapt 1.11.2 py38he774522_0 defaults xlrd 1.2.0 py_0 defaults xlsxwriter 1.3.7 py_0 defaults xlwings 0.20.8 py38_0 defaults xlwt 1.3.0 py38_0 defaults xmltodict 0.12.0 py_0 defaults xz 5.2.5 h62dcd97_0 defaults yaml 0.2.5 he774522_0 defaults yapf 0.30.0 py_0 defaults yfinance 0.1.54 pypi_0 pypi zeromq 4.3.2 ha925a31_3 defaults zict 2.0.0 py_0 defaults zipp 3.4.0 pyhd3eb1b0_0 defaults zlib 1.2.11 h62dcd97_4 defaults zope 1.0 py38_1 defaults zope.event 4.5.0 py38_0 defaults zope.interface 5.1.2 py38he774522_0 defaults zstd 1.4.5 h04227a9_0 defaults ```
rharfoot commented 2 years ago

Same issue for upgrade from 2.0.3 to 2.1.0 on MacOS

As steveSchneider describes, updater never gets past "updating package on root", either using the pop-up window that appears when Anaconda is started or after closing Anaconda. I have left it running overnight with no success.

Anaconda version: 2.0.3

Operating system: MacOS 10.13.6 (High Sierra)

Conda info:

   active environment : base
    active env location : /Users/r*****/anaconda3
            shell level : 1
       user config file : /Users/r*****/.condarc
 populated config files : /Users/r*****/.condarc
          conda version : 4.10.3
    conda-build version : 3.18.9
         python version : 3.7.4.final.0
       virtual packages : __osx=10.13.6=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /Users/r*****/anaconda3  (writable)
      conda av data dir : /Users/r*****/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://conda.anaconda.org/conda-forge/osx-64
                          https://conda.anaconda.org/conda-forge/noarch
                          https://conda.anaconda.org/bioconda/osx-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/r*****/anaconda3/pkgs
                          /Users/r*****/.conda/pkgs
       envs directories : /Users/r*****/anaconda3/envs
                          /Users/r*****/.conda/envs
               platform : osx-64
             user-agent : conda/4.10.3 requests/2.22.0 CPython/3.7.4 Darwin/17.7.0 OSX/10.13.6
                UID:GID : 504:20
             netrc file : None
           offline mode : False

Package list:

# packages in environment at /Users/r*****/anaconda3:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0                    py37_0    defaults
_r-mutex                  1.0.0               anacondar_1    defaults
alabaster                 0.7.12                   py37_0    defaults
anaconda                  2019.10                  py37_0    defaults
anaconda-client           1.7.2                    py37_0    defaults
anaconda-navigator        2.0.3                    py37_0    defaults
anaconda-project          0.8.3                      py_0    defaults
appnope                   0.1.0                    py37_0    defaults
appscript                 1.1.0            py37h1de35cc_0    defaults
asn1crypto                1.0.1                    py37_0    defaults
astroid                   2.3.1                    py37_0    defaults
astropy                   3.2.2            py37h1de35cc_0    defaults
atomicwrites              1.3.0                    py37_1    defaults
attrs                     19.2.0                     py_0    defaults
babel                     2.7.0                      py_0    defaults
backcall                  0.1.0                    py37_0    defaults
backports                 1.0                        py_2    defaults
backports.functools_lru_cache 1.6.1                      py_0    defaults
backports.os              0.1.1                    py37_0    defaults
backports.shutil_get_terminal_size 1.0.0                    py37_2    defaults
backports.tempfile        1.0                        py_1    defaults
backports.weakref         1.0.post1                  py_1    defaults
beautifulsoup4            4.8.0                    py37_0    defaults
biopython                 1.79             py37h271585c_0    conda-forge
bitarray                  1.0.1            py37h1de35cc_0    defaults
bkcharts                  0.2                      py37_0    defaults
blas                      1.0                         mkl    defaults
bleach                    3.1.0                    py37_0    defaults
blosc                     1.16.3               hd9629dc_0    defaults
bokeh                     1.3.4                    py37_0    defaults
boto                      2.49.0                   py37_0    defaults
bottleneck                1.2.1            py37h1d22016_1    defaults
bowtie2                   2.3.5            py37h5c9b4e4_0    bioconda
bwa                       0.7.17               h2573ce8_7    bioconda
bwidget                   1.9.11                        1    defaults
bzip2                     1.0.8                h1de35cc_0    defaults
ca-certificates           2019.8.28                     0    defaults
cairo                     1.14.12              hc4e6be7_4    defaults
cctools                   895                           1    defaults
certifi                   2019.9.11                py37_0    conda-forge
cffi                      1.12.3           py37hb5b8e2f_0    defaults
chardet                   3.0.4                 py37_1003    defaults
clang                     4.0.1                         1    defaults
clang_osx-64              4.0.1               h1ce6c1d_18    defaults
clangxx                   4.0.1                         1    defaults
clangxx_osx-64            4.0.1               h22b1bf0_18    defaults
click                     7.0                      py37_0    defaults
cloudpickle               1.2.2                      py_0    defaults
clyent                    1.2.2                    py37_1    defaults
colorama                  0.4.1                    py37_0    defaults
compiler-rt               4.0.1                hcfea43d_1    defaults
conda                     4.10.3           py37hf985489_2    conda-forge
conda-build               3.18.9                   py37_3    defaults
conda-content-trust       0.1.3              pyhd8ed1ab_0    conda-forge
conda-env                 2.6.0                         1    defaults
conda-package-handling    1.6.0            py37h1de35cc_0    defaults
conda-repo-cli            1.0.4              pyhd3eb1b0_0    defaults
conda-token               0.3.0              pyhd3eb1b0_0    defaults
conda-verify              3.4.2                      py_1    defaults
contextlib2               0.6.0                      py_0    defaults
cryptography              2.7              py37ha12b0ac_0    defaults
curl                      7.65.3               ha441bb4_0    defaults
cycler                    0.10.0                   py37_0    defaults
cython                    0.29.13          py37h0a44026_0    defaults
cytoolz                   0.10.0           py37h1de35cc_0    defaults
dask                      2.5.2                      py_0    defaults
dask-core                 2.5.2                      py_0    defaults
dbus                      1.13.6               h90a0687_0    defaults
decorator                 4.4.0                    py37_1    defaults
defusedxml                0.6.0                      py_0    defaults
distributed               2.5.2                      py_0    defaults
docutils                  0.15.2                   py37_0    defaults
entrypoints               0.3                      py37_0    defaults
et_xmlfile                1.0.1                    py37_0    defaults
expat                     2.2.6                h0a44026_0    defaults
fastcache                 1.1.0            py37h1de35cc_0    defaults
filelock                  3.0.12                     py_0    defaults
flask                     1.1.1                      py_0    defaults
font-ttf-dejavu-sans-mono 2.37                 h6964260_0    defaults
font-ttf-inconsolata      2.001                hcb22688_0    defaults
font-ttf-source-code-pro  2.030                h7457263_0    defaults
font-ttf-ubuntu           0.83                 h8b1ccd4_0    defaults
fontconfig                2.13.0               h5d5b041_1    defaults
fonts-anaconda            1                    h8fa9717_0    defaults
freetype                  2.9.1                hb4e5f40_0    defaults
fribidi                   1.0.5                h1de35cc_0    defaults
fsspec                    0.5.2                      py_0    defaults
future                    0.18.2                   py37_0    defaults
get_terminal_size         1.0.0                h7520d66_0    defaults
gettext                   0.19.8.1             h15daf44_3    defaults
gevent                    1.4.0            py37h1de35cc_0    defaults
gfortran_osx-64           4.8.5                h22b1bf0_8    defaults
glib                      2.56.2               hd9629dc_0    defaults
glob2                     0.7                        py_0    defaults
gmp                       6.1.2                hb37e062_1    defaults
gmpy2                     2.0.8            py37h6ef4df4_2    defaults
graphite2                 1.3.13               h2098e52_0    defaults
greenlet                  0.4.15           py37h1de35cc_0    defaults
gsl                       2.4                  h1de35cc_4    defaults
h5py                      2.9.0            py37h3134771_0    defaults
harfbuzz                  1.8.8                hb8d4a28_0    defaults
hdf5                      1.10.4               hfa1e0ec_0    defaults
heapdict                  1.0.1                      py_0    defaults
html5lib                  1.0.1                    py37_0    defaults
htslib                    1.9                  h3a161e8_7    bioconda
icu                       58.2                 h4b95b61_1    defaults
idna                      2.8                      py37_0    defaults
imageio                   2.6.0                    py37_0    defaults
imagesize                 1.1.0                    py37_0    defaults
importlib_metadata        0.23                     py37_0    defaults
intel-openmp              2019.4                      233    defaults
ipykernel                 5.1.2            py37h39e3cac_0    defaults
ipython                   7.8.0            py37h39e3cac_0    defaults
ipython_genutils          0.2.0                    py37_0    defaults
ipywidgets                7.5.1                      py_0    defaults
isort                     4.3.21                   py37_0    defaults
itsdangerous              1.1.0                    py37_0    defaults
jalview                   2.10.5                        3    bioconda
jbig                      2.1                  h4d881f8_0    defaults
jdcal                     1.4.1                      py_0    defaults
jedi                      0.15.1                   py37_0    defaults
jinja2                    2.10.3                     py_0    defaults
joblib                    0.13.2                   py37_0    defaults
jpeg                      9b                   he5867d9_2    defaults
json5                     0.8.5                      py_0    defaults
jsonschema                3.0.2                    py37_0    defaults
jupyter                   1.0.0                    py37_7    defaults
jupyter_client            5.3.3                    py37_1    defaults
jupyter_console           6.0.0                    py37_0    defaults
jupyter_core              4.5.0                      py_0    defaults
jupyterlab                1.1.4              pyhf63ae98_0    defaults
jupyterlab_server         1.0.6                      py_0    defaults
keyring                   18.0.0                   py37_0    defaults
kiwisolver                1.1.0            py37h0a44026_0    defaults
krb5                      1.16.1               hddcf347_7    defaults
lazy-object-proxy         1.4.2            py37h1de35cc_0    defaults
ld64                      274.2                         1    defaults
libarchive                3.3.3                h786848e_5    defaults
libcurl                   7.65.3               h051b688_0    defaults
libcxx                    4.0.1                hcfea43d_1    defaults
libcxxabi                 4.0.1                hcfea43d_1    defaults
libdeflate                1.0                  h1de35cc_1    bioconda
libedit                   3.1.20181209         hb402a30_0    defaults
libffi                    3.2.1                h475c297_4    defaults
libgfortran               3.0.1                h93005f0_2    defaults
libiconv                  1.15                 hdd342a3_7    defaults
liblief                   0.9.0                h2a1bed3_2    defaults
libpng                    1.6.37               ha441bb4_0    defaults
libsodium                 1.0.16               h3efe00b_0    defaults
libssh2                   1.8.2                ha12b0ac_0    defaults
libtiff                   4.0.10               hcb84e12_2    defaults
libxcb                    1.13              h35c211d_1003    conda-forge
libxml2                   2.9.9                hf6e021a_1    defaults
libxslt                   1.1.33               h33a18ac_0    defaults
llvm                      4.0.1                         1    defaults
llvm-lto-tapi             4.0.1                         1    defaults
llvm-openmp               4.0.1                hcfea43d_1    defaults
llvmlite                  0.29.0           py37h98b8051_0    defaults
locket                    0.2.0                    py37_1    defaults
lxml                      4.4.1            py37hef8c89e_0    defaults
lz4-c                     1.8.1.2              h1de35cc_0    defaults
lzo                       2.10                 h362108e_2    defaults
make                      4.2.1                h3efe00b_1    defaults
markupsafe                1.1.1            py37h1de35cc_0    defaults
matplotlib                3.1.1            py37h54f8f79_0    defaults
mccabe                    0.6.1                    py37_1    defaults
mistune                   0.8.4            py37h1de35cc_0    defaults
mkl                       2019.4                      233    defaults
mkl-service               2.3.0            py37hfbe908c_0    defaults
mkl_fft                   1.0.14           py37h5e564d8_0    defaults
mkl_random                1.1.0            py37ha771720_0    defaults
mock                      3.0.5                    py37_0    defaults
more-itertools            7.2.0                    py37_0    defaults
mpc                       1.1.0                h6ef4df4_1    defaults
mpfr                      4.0.1                h3018a27_3    defaults
mpmath                    1.1.0                    py37_0    defaults
msgpack-python            0.6.1            py37h04f5b5a_1    defaults
multipledispatch          0.6.0                    py37_0    defaults
navigator-updater         0.2.1                    py37_0    defaults
nbconvert                 5.6.0                    py37_1    defaults
nbformat                  4.4.0                    py37_0    defaults
ncurses                   6.1                  h0a44026_1    defaults
networkx                  2.3                        py_0    defaults
nltk                      3.4.5                    py37_0    defaults
nose                      1.3.7                    py37_2    defaults
notebook                  6.0.1                    py37_0    defaults
numba                     0.45.1           py37h6440ff4_0    defaults
numexpr                   2.7.0            py37h7413580_0    defaults
numpy                     1.17.2           py37h99e6662_0    defaults
numpy-base                1.17.2           py37h6575580_0    defaults
numpydoc                  0.9.1                      py_0    defaults
olefile                   0.46                     py37_0    defaults
openjdk                   8.0.152              h393ad39_1    defaults
openjpeg                  2.3.1                hdc36067_1    conda-forge
openpyxl                  3.0.0                      py_0    defaults
openssl                   1.1.1d               h1de35cc_2    defaults
packaging                 19.2                       py_0    defaults
pandas                    0.25.1           py37h0a44026_0    defaults
pandoc                    2.2.3.2                       0    defaults
pandocfilters             1.4.2                    py37_1    defaults
pango                     1.42.4               h060686c_0    defaults
parso                     0.5.1                      py_0    defaults
partd                     1.0.0                      py_0    defaults
path.py                   12.0.1                     py_0    defaults
pathlib2                  2.3.5                    py37_0    defaults
patsy                     0.5.1                    py37_0    defaults
pcre                      8.43                 h0a44026_0    defaults
pep8                      1.7.1                    py37_0    defaults
perl                      5.26.2            haec8ef5_1006    conda-forge
pexpect                   4.7.0                    py37_0    defaults
pickleshare               0.7.5                    py37_0    defaults
pillow                    6.2.0            py37hb68e598_0    defaults
pip                       19.2.3                   py37_0    defaults
pixman                    0.38.0               h1de35cc_0    defaults
pkginfo                   1.5.0.1                  py37_0    defaults
pluggy                    0.13.0                   py37_0    defaults
ply                       3.11                     py37_0    defaults
poppler                   0.65.0               ha097c24_1    defaults
poppler-data              0.4.9                         1    conda-forge
prometheus_client         0.7.1                      py_0    defaults
prompt_toolkit            2.0.10                     py_0    defaults
psutil                    5.6.3            py37h1de35cc_0    defaults
pthread-stubs             0.4               hc929b4f_1001    conda-forge
ptyprocess                0.6.0                    py37_0    defaults
py                        1.8.0                    py37_0    defaults
py-lief                   0.9.0            py37h1413db1_2    defaults
pycodestyle               2.5.0                    py37_0    defaults
pycosat                   0.6.3            py37h1de35cc_0    defaults
pycparser                 2.19                     py37_0    defaults
pycrypto                  2.6.1            py37h1de35cc_9    defaults
pycurl                    7.43.0.3         py37ha12b0ac_0    defaults
pyflakes                  2.1.1                    py37_0    defaults
pygments                  2.4.2                      py_0    defaults
pylint                    2.4.2                    py37_0    defaults
pyodbc                    4.0.27           py37h0a44026_0    defaults
pyopenssl                 19.0.0                   py37_0    defaults
pyparsing                 2.4.2                      py_0    defaults
pyqt                      5.9.2            py37h655552a_2    defaults
pyrsistent                0.15.4           py37h1de35cc_0    defaults
pysocks                   1.7.1                    py37_0    defaults
pytables                  3.5.2            py37h5bccee9_1    defaults
pytest                    5.2.1                    py37_0    defaults
pytest-arraydiff          0.3              py37h39e3cac_0    defaults
pytest-astropy            0.5.0                    py37_0    defaults
pytest-doctestplus        0.4.0                      py_0    defaults
pytest-openfiles          0.4.0                      py_0    defaults
pytest-remotedata         0.3.2                    py37_0    defaults
python                    3.7.4                h359304d_1    defaults
python-dateutil           2.8.0                    py37_0    defaults
python-libarchive-c       2.8                     py37_13    defaults
python.app                2                        py37_9    defaults
python_abi                3.7                     2_cp37m    conda-forge
pytz                      2019.3                     py_0    defaults
pywavelets                1.0.3            py37h1d22016_1    defaults
pyyaml                    5.1.2            py37h1de35cc_0    defaults
pyzmq                     18.1.0           py37h0a44026_0    defaults
qt                        5.9.7                h468cd18_1    defaults
qtawesome                 0.6.0                      py_0    defaults
qtconsole                 4.5.5                      py_0    defaults
qtpy                      1.9.0                      py_0    defaults
r-askpass                 1.0               r36h1de35cc_0    defaults
r-assertthat              0.2.1             r36h6115d3f_0    defaults
r-backports               1.1.4             r36h46e59ec_0    defaults
r-base                    3.6.1                hcb44179_1    defaults
r-base64enc               0.1_3             r36h46e59ec_4    defaults
r-bh                      1.69.0_1          r36h6115d3f_0    defaults
r-bit                     1.1_14            r36h46e59ec_0    defaults
r-bit64                   0.9_7             r36h46e59ec_0    defaults
r-bitops                  1.0_6             r36h46e59ec_4    defaults
r-blob                    1.1.1             r36h6115d3f_0    defaults
r-catools                 1.17.1.2          r36h466af19_0    defaults
r-cellranger              1.1.0             r36h6115d3f_0    defaults
r-cli                     1.1.0             r36h6115d3f_0    defaults
r-clipr                   0.6.0             r36h6115d3f_0    defaults
r-config                  0.3               r36h6115d3f_0    defaults
r-crayon                  1.3.4             r36h6115d3f_0    defaults
r-curl                    3.3               r36h46e59ec_0    defaults
r-dbi                     1.0.0             r36h6115d3f_0    defaults
r-dbplyr                  1.4.0             r36h6115d3f_0    defaults
r-digest                  0.6.18            r36h46e59ec_0    defaults
r-dplyr                   0.8.0.1           r36h466af19_0    defaults
r-ellipsis                0.1.0             r36h46e59ec_0    defaults
r-evaluate                0.13              r36h6115d3f_0    defaults
r-fansi                   0.4.0             r36h46e59ec_0    defaults
r-forcats                 0.4.0             r36h6115d3f_0    defaults
r-forge                   0.2.0             r36h6115d3f_0    defaults
r-generics                0.0.2             r36h6115d3f_0    defaults
r-glue                    1.3.1             r36h46e59ec_0    defaults
r-haven                   2.1.0             r36h466af19_0    defaults
r-highr                   0.8               r36h6115d3f_0    defaults
r-hms                     0.4.2             r36h6115d3f_0    defaults
r-htmltools               0.3.6             r36h466af19_0    defaults
r-htmlwidgets             1.3               r36h6115d3f_0    defaults
r-httpuv                  1.5.1             r36h466af19_0    defaults
r-httr                    1.4.0             r36h6115d3f_0    defaults
r-jsonlite                1.6               r36h46e59ec_0    defaults
r-knitr                   1.22              r36h6115d3f_0    defaults
r-later                   0.8.0             r36h466af19_0    defaults
r-magrittr                1.5               r36h6115d3f_4    defaults
r-markdown                0.9               r36h46e59ec_0    defaults
r-mime                    0.6               r36h46e59ec_0    defaults
r-miniui                  0.1.1.1           r36h6115d3f_0    defaults
r-mongolite               2.0.1             r36h46e59ec_0    defaults
r-odbc                    1.1.5             r36h0a44026_0    defaults
r-openssl                 1.3               r36h46e59ec_0    defaults
r-packrat                 0.5.0             r36h6115d3f_0    defaults
r-pillar                  1.3.1             r36h6115d3f_0    defaults
r-pkgconfig               2.0.2             r36h6115d3f_0    defaults
r-pki                     0.1_5.1           r36h46e59ec_1    defaults
r-plogr                   0.2.0             r36h6115d3f_0    defaults
r-prettyunits             1.0.2             r36h6115d3f_0    defaults
r-profvis                 0.3.5             r36h46e59ec_0    defaults
r-progress                1.2.0             r36h6115d3f_0    defaults
r-promises                1.0.1             r36h466af19_0    defaults
r-purrr                   0.3.2             r36h46e59ec_0    defaults
r-r2d3                    0.2.3             r36h6115d3f_0    defaults
r-r6                      2.4.0             r36h6115d3f_0    defaults
r-rappdirs                0.3.1             r36h46e59ec_0    defaults
r-rcpp                    1.0.1             r36h466af19_0    defaults
r-rcurl                   1.95_4.12         r36h46e59ec_0    defaults
r-readr                   1.3.1             r36h466af19_0    defaults
r-readxl                  1.3.1             r36h466af19_0    defaults
r-rematch                 1.0.1             r36h6115d3f_0    defaults
r-rjava                   0.9_11            r36h46e59ec_0    defaults
r-rjdbc                   0.2_7.1           r36h6115d3f_0    defaults
r-rjsonio                 1.3_1.1           r36h466af19_0    defaults
r-rlang                   0.3.4             r36h46e59ec_0    defaults
r-rmarkdown               1.12              r36h6115d3f_0    defaults
r-rprojroot               1.3_2             r36h6115d3f_0    defaults
r-rsconnect               0.8.13            r36h6115d3f_0    defaults
r-rstudioapi              0.10              r36h6115d3f_0    defaults
r-shiny                   1.3.2             r36h6115d3f_0    defaults
r-sourcetools             0.1.7             r36h466af19_0    defaults
r-sparklyr                1.0.0             r36h6115d3f_0    defaults
r-stringi                 1.4.3             r36h466af19_0    defaults
r-stringr                 1.4.0             r36h6115d3f_0    defaults
r-sys                     3.2               r36h46e59ec_0    defaults
r-tibble                  2.1.1             r36h46e59ec_0    defaults
r-tidyr                   0.8.3             r36h466af19_0    defaults
r-tidyselect              0.2.5             r36h466af19_0    defaults
r-tinytex                 0.12              r36h6115d3f_0    defaults
r-utf8                    1.1.4             r36h46e59ec_0    defaults
r-withr                   2.1.2             r36h6115d3f_0    defaults
r-xfun                    0.6               r36h6115d3f_0    defaults
r-xml                     3.98_1.19         r36h46e59ec_0    defaults
r-xml2                    1.2.0             r36h466af19_0    defaults
r-xtable                  1.8_4             r36h6115d3f_0    defaults
r-yaml                    2.2.0             r36h46e59ec_0    defaults
readline                  7.0                  h1de35cc_5    defaults
requests                  2.22.0                   py37_0    defaults
ripgrep                   0.10.0               hc07d326_0    defaults
rope                      0.14.0                     py_0    defaults
rstudio                   1.1.456              h04f5b5a_1    defaults
ruamel_yaml               0.15.46          py37h1de35cc_0    defaults
samtools                  1.9                 h8aa4d43_12    bioconda
scikit-image              0.15.0           py37h0a44026_0    defaults
scikit-learn              0.21.3           py37h27c97d8_0    defaults
scipy                     1.3.1            py37h1410ff5_0    defaults
seaborn                   0.9.0                    py37_0    defaults
send2trash                1.5.0                    py37_0    defaults
setuptools                41.4.0                   py37_0    defaults
simplegeneric             0.8.1                    py37_2    defaults
singledispatch            3.4.0.3                  py37_0    defaults
sip                       4.19.8           py37h0a44026_0    defaults
six                       1.12.0                   py37_0    defaults
snappy                    1.1.7                he62c110_3    defaults
snowballstemmer           2.0.0                      py_0    defaults
sortedcollections         1.1.2                    py37_0    defaults
sortedcontainers          2.1.0                    py37_0    defaults
soupsieve                 1.9.3                    py37_0    defaults
sphinx                    2.2.0                      py_0    defaults
sphinxcontrib             1.0                      py37_1    defaults
sphinxcontrib-applehelp   1.0.1                      py_0    defaults
sphinxcontrib-devhelp     1.0.1                      py_0    defaults
sphinxcontrib-htmlhelp    1.0.2                      py_0    defaults
sphinxcontrib-jsmath      1.0.1                      py_0    defaults
sphinxcontrib-qthelp      1.0.2                      py_0    defaults
sphinxcontrib-serializinghtml 1.1.3                      py_0    defaults
sphinxcontrib-websupport  1.1.2                      py_0    defaults
spyder                    3.3.6                    py37_0    defaults
spyder-kernels            0.5.2                    py37_0    defaults
sqlalchemy                1.3.9            py37h1de35cc_0    defaults
sqlite                    3.30.0               ha441bb4_0    defaults
statsmodels               0.10.1           py37h1d22016_0    defaults
sympy                     1.4                      py37_0    defaults
tbb                       2019.8               h04f5b5a_0    defaults
tblib                     1.4.0                      py_0    defaults
terminado                 0.8.2                    py37_0    defaults
testpath                  0.4.2                    py37_0    defaults
texlive-core              20180414             ha09c46f_0    defaults
tk                        8.6.8                ha441bb4_0    defaults
tktable                   2.10                 h1de35cc_0    defaults
toolz                     0.10.0                     py_0    defaults
tornado                   6.0.3            py37h1de35cc_0    defaults
tqdm                      4.36.1                     py_0    defaults
traitlets                 4.3.3                    py37_0    defaults
unicodecsv                0.14.1                   py37_0    defaults
unixodbc                  2.3.7                h1de35cc_0    defaults
urllib3                   1.24.2                   py37_0    defaults
wcwidth                   0.1.7                    py37_0    defaults
webencodings              0.5.1                    py37_1    defaults
werkzeug                  0.16.0                     py_0    defaults
wheel                     0.33.6                   py37_0    defaults
widgetsnbextension        3.5.1                    py37_0    defaults
wrapt                     1.11.2           py37h1de35cc_0    defaults
wurlitzer                 1.0.3                    py37_0    defaults
xlrd                      1.2.0                    py37_0    defaults
xlsxwriter                1.2.1                      py_0    defaults
xlwings                   0.15.10                  py37_0    defaults
xlwt                      1.3.0                    py37_0    defaults
xmltodict                 0.12.0                     py_0    conda-forge
xorg-fixesproto           5.0               h0d85af4_1002    conda-forge
xorg-inputproto           2.3.2             h35c211d_1002    conda-forge
xorg-kbproto              1.0.7             h35c211d_1002    conda-forge
xorg-libx11               1.7.2                h0d85af4_0    conda-forge
xorg-libxau               1.0.9                h35c211d_0    conda-forge
xorg-libxdmcp             1.1.3                h35c211d_0    conda-forge
xorg-libxext              1.3.4                h0d85af4_1    conda-forge
xorg-libxfixes            5.0.3             h0d85af4_1004    conda-forge
xorg-libxi                1.7.10               h0d85af4_0    conda-forge
xorg-libxtst              1.2.3             h0d85af4_1002    conda-forge
xorg-recordproto          1.14.2            h0d85af4_1002    conda-forge
xorg-xextproto            7.3.0             h35c211d_1002    conda-forge
xorg-xproto               7.0.31            h35c211d_1007    conda-forge
xz                        5.2.4                h1de35cc_4    defaults
yaml                      0.1.7                hc338f04_2    defaults
zeromq                    4.3.1                h0a44026_3    defaults
zict                      1.0.0                      py_0    defaults
zipp                      0.6.0                      py_0    defaults
zlib                      1.2.11               h1de35cc_3    defaults
zstd                      1.3.7                h5bba6e5_0    defaults
whitedear commented 2 years ago

I have the same problem

DJBerry commented 2 years ago

I'm having the same problem while trying to update from 2.0.3 to 2.1.0.

LuisFerTR commented 2 years ago

I'm having the same problem, which information should I share to help tracking the issue?

kristina969 commented 2 years ago

Same issue for upgrade from 1.10.0 to 2.1.0 on Windows

As steveSchneider describes, updater never gets past "updating package on root", either using the pop-up window that appears when Anaconda is started or after closing Anaconda. I have left it running overnight with no success.

Anaconda version: 1.10.0

Operating system: Windows 10 (20H2)

Conda info: Microsoft Windows [Version 10.0.19042.1288] (c) Microsoft Corporation. Alle Rechte vorbehalten.

(base) C:\Users\Besitzer>conda info

 active environment : base
active env location : C:\Users\Besitzer\anaconda3
        shell level : 1
   user config file : C:\Users\Besitzer\.condarc

populated config files : C:\Users\Besitzer.condarc conda version : 4.10.3 conda-build version : 3.20.5 python version : 3.8.5.final.0 virtual packages : win=0=0 archspec=1=x86_64 base environment : C:\Users\Besitzer\anaconda3 (writable) conda av data dir : C:\Users\Besitzer\anaconda3\etc\conda conda av metadata url : None channel URLs : https://repo.anaconda.com/pkgs/main/win-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/r/win-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/msys2/win-64 https://repo.anaconda.com/pkgs/msys2/noarch package cache : C:\Users\Besitzer\anaconda3\pkgs C:\Users\Besitzer.conda\pkgs C:\Users\Besitzer\AppData\Local\conda\conda\pkgs envs directories : C:\Users\Besitzer\anaconda3\envs C:\Users\Besitzer.conda\envs C:\Users\Besitzer\AppData\Local\conda\conda\envs platform : win-64 user-agent : conda/4.10.3 requests/2.25.1 CPython/3.8.5 Windows/10 Windows/10.0.19041 administrator : False netrc file : None offline mode : False

(base) C:\Users\Besitzer>

Package list:

packages in environment at C:\Users\Besitzer\anaconda3:

#

Name Version Build Channel

_ipyw_jlab_nb_ext_conf 0.1.0 py38_0 defaults _py-xgboost-mutex 2.0 cpu_0 anaconda alabaster 0.7.12 py_0 defaults anaconda 2020.11 py38_0 defaults anaconda-client 1.7.2 py38_0 defaults anaconda-navigator 1.10.0 py38_0 defaults anaconda-project 0.8.4 py_0 defaults argh 0.26.2 py38_0 defaults argon2-cffi 20.1.0 py38he774522_1 defaults asn1crypto 1.4.0 py_0 defaults astroid 2.4.2 py38_0 defaults astropy 4.0.2 py38he774522_0 defaults async_generator 1.10 py_0 defaults atomicwrites 1.4.0 py_0 defaults attrs 20.3.0 pyhd3eb1b0_0 defaults autopep8 1.5.4 py_0 defaults babel 2.8.1 pyhd3eb1b0_0 defaults backcall 0.2.0 py_0 defaults backports 1.0 py_2 defaults backports.functools_lru_cache 1.6.1 py_0 defaults backports.shutil_get_terminal_size 1.0.0 py38_2 defaults backports.tempfile 1.0 py_1 defaults backports.weakref 1.0.post1 py_1 defaults bcrypt 3.2.0 py38he774522_0 defaults beautifulsoup4 4.9.3 pyhb0f4dca_0 defaults bitarray 1.6.1 py38h2bbff1b_0 defaults bkcharts 0.2 py38_0 defaults blas 1.0 mkl defaults bleach 3.2.1 py_0 defaults blosc 1.20.1 h7bd577a_0 defaults bokeh 2.2.3 py38_0 defaults boto 2.49.0 py38_0 defaults bottleneck 1.3.2 py38h2a96729_1 defaults brotlipy 0.7.0 py38he774522_1000 defaults bzip2 1.0.8 he774522_0 defaults ca-certificates 2020.10.14 0 anaconda certifi 2020.6.20 pyhd3eb1b0_3 defaults cffi 1.14.3 py38h7a1dbc1_0 defaults chardet 3.0.4 py38_1003 defaults click 7.1.2 py_0 defaults cloudpickle 1.6.0 py_0 defaults clyent 1.2.2 py38_1 defaults colorama 0.4.4 py_0 defaults comtypes 1.1.7 py38_1001 defaults conda 4.10.3 py38haa95532_0 defaults conda-build 3.20.5 py38_1 defaults conda-env 2.6.0 1 defaults conda-package-handling 1.7.2 py38h76e460a_0 defaults conda-verify 3.4.2 py_1 defaults console_shortcut 0.1.1 4 defaults contextlib2 0.6.0.post1 py_0 defaults cryptography 3.1.1 py38h7a1dbc1_0 defaults curl 7.71.1 h2a8f88b_1 defaults cycler 0.10.0 py38_0 defaults cython 0.29.21 py38ha925a31_0 defaults cytoolz 0.11.0 py38he774522_0 defaults dask 2.30.0 py_0 defaults dask-core 2.30.0 py_0 defaults decorator 4.4.2 py_0 defaults defusedxml 0.6.0 py_0 defaults diff-match-patch 20200713 py_0 defaults distributed 2.30.1 py38haa95532_0 defaults docutils 0.16 py38_1 defaults entrypoints 0.3 py38_0 defaults et_xmlfile 1.0.1 py_1001 defaults fastcache 1.1.0 py38he774522_0 defaults filelock 3.0.12 py_0 defaults flake8 3.8.4 py_0 defaults flask 1.1.2 py_0 defaults freetype 2.10.4 hd328e21_0 defaults fsspec 0.8.3 py_0 defaults future 0.18.2 py38_1 defaults get_terminal_size 1.0.0 h38e98db_0 defaults gevent 20.9.0 py38he774522_0 defaults glob2 0.7 py_0 defaults graphviz 2.38 hfd603c8_2 defaults greenlet 0.4.17 py38he774522_0 defaults h5py 2.10.0 py38h5e291fa_0 defaults hdf5 1.10.4 h7ebc959_0 defaults heapdict 1.0.1 py_0 defaults html5lib 1.1 py_0 defaults icc_rt 2019.0.0 h0cc432a_1 defaults icu 58.2 ha925a31_3 defaults idna 2.10 py_0 defaults imageio 2.9.0 py_0 defaults imagesize 1.2.0 py_0 defaults importlib-metadata 2.0.0 py_1 defaults importlib_metadata 2.0.0 1 defaults iniconfig 1.1.1 py_0 defaults intel-openmp 2020.2 254 defaults intervaltree 3.1.0 py_0 defaults ipykernel 5.3.4 py38h5ca1d4c_0 defaults ipython 7.19.0 py38hd4e2768_0 defaults ipython_genutils 0.2.0 py38_0 defaults ipywidgets 7.5.1 py_1 defaults isort 5.6.4 py_0 defaults itsdangerous 1.1.0 py_0 defaults jdcal 1.4.1 py_0 defaults jedi 0.17.1 py38_0 defaults jinja2 2.11.2 py_0 defaults joblib 0.17.0 py_0 defaults jpeg 9b hb83a4c4_2 defaults json5 0.9.5 py_0 defaults jsonschema 3.2.0 py_2 defaults jupyter 1.0.0 py38_7 defaults jupyter_client 6.1.7 py_0 defaults jupyter_console 6.2.0 py_0 defaults jupyter_core 4.6.3 py38_0 defaults jupyterlab 2.2.6 py_0 defaults jupyterlab_pygments 0.1.2 py_0 defaults jupyterlab_server 1.2.0 py_0 defaults keyring 21.4.0 py38_1 defaults kiwisolver 1.3.0 py38hd77b12b_0 defaults krb5 1.18.2 hc04afaa_0 defaults lazy-object-proxy 1.4.3 py38he774522_0 defaults libarchive 3.4.2 h5e25573_0 defaults libcurl 7.71.1 h2a8f88b_1 defaults libiconv 1.15 h1df5818_7 defaults liblief 0.10.1 ha925a31_0 defaults libpng 1.6.37 h2a8f88b_0 defaults libsodium 1.0.18 h62dcd97_0 defaults libspatialindex 1.9.3 h33f27b4_0 defaults libssh2 1.9.0 h7a1dbc1_1 defaults libtiff 4.1.0 h56a325e_1 defaults libxgboost 1.3.3 hd77b12b_0 defaults libxml2 2.9.10 hb89e7f3_3 defaults libxslt 1.1.34 he774522_0 defaults llvmlite 0.34.0 py38h1a82afc_4 defaults locket 0.2.0 py38_1 defaults lxml 4.6.1 py38h1350720_0 defaults lz4-c 1.9.2 hf4a77e7_3 defaults lzo 2.10 he774522_2 defaults m2w64-gcc-libgfortran 5.3.0 6 defaults m2w64-gcc-libs 5.3.0 7 defaults m2w64-gcc-libs-core 5.3.0 7 defaults m2w64-gmp 6.1.0 2 defaults m2w64-libwinpthread-git 5.0.0.4634.697f757 2 defaults markupsafe 1.1.1 py38he774522_0 defaults matplotlib 3.3.2 0 defaults matplotlib-base 3.3.2 py38hba9282a_0 defaults mccabe 0.6.1 py38_1 defaults menuinst 1.4.16 py38he774522_1 defaults missingno 0.5.0 pypi_0 pypi mistune 0.8.4 py38he774522_1000 defaults mkl 2020.2 256 defaults mkl-service 2.3.0 py38hb782905_0 defaults mkl_fft 1.2.0 py38h45dec08_0 defaults mkl_random 1.1.1 py38h47e9c7a_0 defaults mock 4.0.2 py_0 defaults more-itertools 8.6.0 pyhd3eb1b0_0 defaults mpmath 1.1.0 py38_0 defaults msgpack-python 1.0.0 py38h74a9793_1 defaults msys2-conda-epoch 20160418 1 defaults multipledispatch 0.6.0 py38_0 defaults navigator-updater 0.2.1 py38_0 defaults nbclient 0.5.1 py_0 defaults nbconvert 6.0.7 py38_0 defaults nbformat 5.0.8 py_0 defaults nest-asyncio 1.4.2 pyhd3eb1b0_0 defaults networkx 2.5 py_0 defaults nltk 3.5 py_0 defaults nose 1.3.7 py38_2 defaults notebook 6.1.4 py38_0 defaults numba 0.51.2 py38hf9181ef_1 defaults numexpr 2.7.1 py38h25d0782_0 defaults numpy 1.19.2 py38hadc3359_0 defaults numpy-base 1.19.2 py38ha3acd2a_0 defaults numpydoc 1.1.0 pyhd3eb1b0_1 defaults olefile 0.46 py_0 defaults openpyxl 3.0.5 py_0 defaults openssl 1.1.1h he774522_0 anaconda packaging 20.4 py_0 defaults pandas 1.1.3 py38ha925a31_0 defaults pandoc 2.11 h9490d1a_0 defaults pandocfilters 1.4.3 py38haa95532_1 defaults paramiko 2.7.2 py_0 defaults parso 0.7.0 py_0 defaults partd 1.1.0 py_0 defaults path 15.0.0 py38_0 defaults path.py 12.5.0 0 defaults pathlib2 2.3.5 py38_0 defaults pathtools 0.1.2 py_1 defaults patsy 0.5.1 py38_0 defaults pep8 1.7.1 py38_0 defaults pexpect 4.8.0 py38_0 defaults pickleshare 0.7.5 py38_1000 defaults pillow 8.0.1 py38h4fa10fc_0 defaults pip 20.2.4 py38haa95532_0 defaults pkginfo 1.6.1 py38haa95532_0 defaults pluggy 0.13.1 py38_0 defaults ply 3.11 py38_0 defaults powershell_shortcut 0.0.1 3 defaults prometheus_client 0.8.0 py_0 defaults prompt-toolkit 3.0.8 py_0 defaults prompt_toolkit 3.0.8 0 defaults psutil 5.7.2 py38he774522_0 defaults py 1.9.0 py_0 defaults py-lief 0.10.1 py38ha925a31_0 defaults py-xgboost 1.3.3 py38haa95532_0 defaults pycodestyle 2.6.0 py_0 defaults pycosat 0.6.3 py38he774522_0 defaults pycparser 2.20 py_2 defaults pycurl 7.43.0.6 py38h7a1dbc1_0 defaults pydocstyle 5.1.1 py_0 defaults pyflakes 2.2.0 py_0 defaults pygments 2.7.2 pyhd3eb1b0_0 defaults pylint 2.6.0 py38_0 defaults pynacl 1.4.0 py38h62dcd97_1 defaults pyodbc 4.0.30 py38ha925a31_0 defaults pyopenssl 19.1.0 py_1 defaults pyparsing 2.4.7 py_0 defaults pyqt 5.9.2 py38ha925a31_4 defaults pyreadline 2.1 py38_1 defaults pyreadr 0.4.2 pypi_0 pypi pyrsistent 0.17.3 py38he774522_0 defaults pysocks 1.7.1 py38_0 defaults pytables 3.6.1 py38ha5be198_0 defaults pytest 6.1.1 py38_0 defaults python 3.8.5 h5fd99cc_1 defaults python-dateutil 2.8.1 py_0 defaults python-graphviz 0.17 pypi_0 pypi python-jsonrpc-server 0.4.0 py_0 defaults python-language-server 0.35.1 py_0 defaults python-libarchive-c 2.9 py_0 defaults pytz 2020.1 py_0 defaults pywavelets 1.1.1 py38he774522_2 defaults pywin32 227 py38he774522_1 defaults pywin32-ctypes 0.2.0 py38_1000 defaults pywinpty 0.5.7 py38_0 defaults pyyaml 5.3.1 py38he774522_1 defaults pyzmq 19.0.2 py38ha925a31_1 defaults qdarkstyle 2.8.1 py_0 defaults qt 5.9.7 vc14h73c81de_0 defaults qtawesome 1.0.1 py_0 defaults qtconsole 4.7.7 py_0 defaults qtpy 1.9.0 py_0 defaults regex 2020.10.15 py38he774522_0 defaults requests 2.24.0 py_0 defaults rope 0.18.0 py_0 defaults rtree 0.9.4 py38h21ff451_1 defaults ruamel_yaml 0.15.87 py38he774522_1 defaults scikit-image 0.17.2 py38h1e1f486_0 defaults scikit-learn 0.23.2 py38h47e9c7a_0 defaults scipy 1.5.2 py38h14eb087_0 defaults seaborn 0.11.0 py_0 defaults selenium 3.141.0 py38h2bbff1b_1000 defaults send2trash 1.5.0 py38_0 defaults setuptools 50.3.1 py38haa95532_1 defaults simplegeneric 0.8.1 py38_2 defaults singledispatch 3.4.0.3 py_1001 defaults sip 4.19.13 py38ha925a31_0 defaults six 1.15.0 py38haa95532_0 defaults snowballstemmer 2.0.0 py_0 defaults sortedcollections 1.2.1 py_0 defaults sortedcontainers 2.2.2 py_0 defaults soupsieve 2.0.1 py_0 defaults sphinx 3.2.1 py_0 defaults sphinxcontrib 1.0 py38_1 defaults sphinxcontrib-applehelp 1.0.2 py_0 defaults sphinxcontrib-devhelp 1.0.2 py_0 defaults sphinxcontrib-htmlhelp 1.0.3 py_0 defaults sphinxcontrib-jsmath 1.0.1 py_0 defaults sphinxcontrib-qthelp 1.0.3 py_0 defaults sphinxcontrib-serializinghtml 1.1.4 py_0 defaults sphinxcontrib-websupport 1.2.4 py_0 defaults spyder 4.1.5 py38_0 defaults spyder-kernels 1.9.4 py38_0 defaults sqlalchemy 1.3.20 py38h2bbff1b_0 defaults sqlite 3.33.0 h2a8f88b_0 defaults statsmodels 0.12.0 py38he774522_0 defaults sympy 1.6.2 py38haa95532_1 defaults tblib 1.7.0 py_0 defaults terminado 0.9.1 py38_0 defaults testpath 0.4.4 py_0 defaults threadpoolctl 2.1.0 pyh5ca1d4c_0 defaults tifffile 2020.10.1 py38h8c2d366_2 defaults tk 8.6.10 he774522_0 defaults toml 0.10.1 py_0 defaults toolz 0.11.1 py_0 defaults tornado 6.0.4 py38he774522_1 defaults tqdm 4.50.2 py_0 defaults traitlets 5.0.5 py_0 defaults typing_extensions 3.7.4.3 py_0 defaults ujson 4.0.1 py38ha925a31_0 defaults unicodecsv 0.14.1 py38_0 defaults urllib3 1.25.11 py_0 defaults vc 14.1 h0510ff6_4 defaults vs2015_runtime 14.16.27012 hf0eaf9b_3 defaults watchdog 0.10.3 py38_0 defaults wcwidth 0.2.5 py_0 defaults webencodings 0.5.1 py38_1 defaults werkzeug 1.0.1 py_0 defaults wheel 0.35.1 py_0 defaults widgetsnbextension 3.5.1 py38_0 defaults win_inet_pton 1.1.0 py38_0 defaults win_unicode_console 0.5 py38_0 defaults wincertstore 0.2 py38_0 defaults winpty 0.4.3 4 defaults wordcloud 1.8.1 pypi_0 pypi wrapt 1.11.2 py38he774522_0 defaults xgboost 1.5.0 pypi_0 pypi xlrd 1.2.0 py_0 defaults xlsxwriter 1.3.7 py_0 defaults xlwings 0.20.8 py38_0 defaults xlwt 1.3.0 py38_0 defaults xmltodict 0.12.0 py_0 defaults xz 5.2.5 h62dcd97_0 defaults yaml 0.2.5 he774522_0 defaults yapf 0.30.0 py_0 defaults zeromq 4.3.2 ha925a31_3 defaults zict 2.0.0 py_0 defaults zipp 3.4.0 pyhd3eb1b0_0 defaults zlib 1.2.11 h62dcd97_4 defaults zope 1.0 py38_1 defaults zope.event 4.5.0 py38_0 defaults zope.interface 5.1.2 py38he774522_0 defaults zstd 1.4.5 h04227a9_0 defaults

(base) C:\Users\Besitzer>

bcntp5 commented 2 years ago

I am having the same issue with the Anaconda Navigator update, except when I go and hit update at the top of the screen, then a mini window comes up. It asks me if I want to update to 2.1.0. I say yes. It says the program will shut down then update, but then it ends up not ever doing anything. What can I do to fix this?

Leva69 commented 2 years ago

Same issue as originally reported by steveSchneider2, updating from 2.0.4 to 2.1.0 on Windows 10

WallsnBridges commented 2 years ago

Try conda deactivate and conda update anaconda-navigator

Manu-Fraile commented 2 years ago

Same issue here! I tried uninstalling and installing anaconda-navigator and for some reason I got installed version 2.0.4 instead of 2.1.0. Moreover, I tried to use conda update anaconda-navigator but results in: # All requested packages already installed.

i guess there is some bug from the side of Anaconda?

sblandin2018 commented 2 years ago

I am experiencing the same issue on Windows 10 Pro 21H1 when upgrading from Anaconda Navigator 2.0.4 to 2.1.0.

The update process get struck to 'updating package on root...' step when launched from Anaconda Navigator GUI.

When trying:

conda deactivate
conda update anaconda-navigator

I get the following message:

# All requested packages already installed

As posted by other

sdspieg commented 2 years ago

What worked for me was conda config --remove channels conda-forge

bcntp5 commented 2 years ago

What worked for me was conda config --remove channels conda-forge

Where would I type this in, in order to get it to update?

mmayorga97 commented 2 years ago

What worked for me was conda config --remove channels conda-forge

Where would I type this in, in order to get it to update?

You can use any terminal that is loaded with anaconda packages, for instance the "anaconda prompt" that comes with your installation. I removed the conda forge and the update worked

hwetsman commented 2 years ago

Here's what I get with conda config --remove channels conda-forge:

hwetsman@HOWARD-WETSMANs-iMac in ~ $ conda config --remove channels conda-forge

CondaKeyError: 'channels': 'conda-forge' is not in the 'channels' key of the config file

(base) HOWARD-WETSMANs-iMac:~ hwetsman$

hwetsman commented 2 years ago

BTW, I also have the same problem as the OP. And attempting updating anaconda-navigator to 2.1.0 with conda install anaconda-navigator=2.1.0 resulted in hundreds of lines of incompatibilities (here's the beginning):

hwetsman@HOWARD-WETSMANs-iMac in ~ $ conda install anaconda-navigator=2.1.0 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source. Collecting package metadata (repodata.json): done Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment: | Found conflicts! Looking for incompatible packages. This can take several minutes. Press CTRL-C to abort. Examining conflict for _ipyw_jlab_nb_ext_conf anaconda-navigator jupyterlab navigator-updater python.app spyder _anaconda_depExamining conflict for _ipyw_jlab_nb_ext_conf anaconda-navigator jupyterlab navigator-updater python.app spyder _anaconda_depExamining conflict for conda-pack anaconda-project _anaconda_depends: : 364it [1:08:47, 2.79s/it] Examining conflict for sphinxcontrib-websupport spyder _anaconda_depends sphinx anaconda numpydoc: : 366it [1:08:55, 4.24s/iExamining conflict for gevent _anaconda_depends anaconda: : 367it [1:08:56, 4.24s/it] failed

UnsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment:

Specifications:

ShankaranandaShastry commented 2 years ago

What worked for me was conda config --remove channels conda-forge

Where would I type this in, in order to get it to update?

You can use any terminal that is loaded with anaconda packages, for instance the "anaconda prompt" that comes with your installation. I removed the conda forge and the update worked

I get this error while trying to remove. I am thinking conda-forge is not there. But still the update is stuck. CondaKeyError: 'channels': 'conda-forge' is not in the 'channels' key of the config file

chenghlee commented 2 years ago

@steveSchneider2: can you please start an Anaconda command prompt and provide the output of conda list --explicit and type %CONDA_PREFIX%\conda-meta\history?

chenghlee commented 2 years ago

@steveSchneider2 Actually, can you please try this? Start an Anaconda command prompt and run conda install --force-reinstall defaults::conda. And then try to update Navigator.

steveSchneider2 commented 2 years ago

Cheng,

I followed your instructions.

The Anaconda upgrade had not completed, after 25 minutes… still upgrading…

Steve

From: Cheng H. Lee @.> Sent: Thursday, November 18, 2021 1:41 PM To: ContinuumIO/anaconda-issues @.> Cc: Steve S @.>; Mention @.> Subject: Re: [ContinuumIO/anaconda-issues] Navigator update to 2.1.0 from 2.0.4 never finishes (#12643)

@steveSchneider2 https://github.com/steveSchneider2 Actually, can you please try this? Start an Anaconda command prompt and run conda install --force-reinstall defaults::conda. And then try to update Navigator.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/ContinuumIO/anaconda-issues/issues/12643#issuecomment-973151683 , or unsubscribe https://github.com/notifications/unsubscribe-auth/ALAJMP2ASXDVNLVZ4GTUDKDUMVCEBANCNFSM5FCHDS7A . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub . https://github.com/notifications/beacon/ALAJMP2T4T4QZWWAT77LBEDUMVCEBA5CNFSM5FCHDS7KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOHIAR3QY.gif

steveSchneider2 commented 2 years ago

I actually waited until it finally concluded after 90+ minutes… “Cannot update Anaconda Navigator, UnsatisfiableError”

Steve

From: Cheng H. Lee @.> Sent: Thursday, November 18, 2021 1:41 PM To: ContinuumIO/anaconda-issues @.> Cc: Steve S @.>; Mention @.> Subject: Re: [ContinuumIO/anaconda-issues] Navigator update to 2.1.0 from 2.0.4 never finishes (#12643)

@steveSchneider2 https://github.com/steveSchneider2 Actually, can you please try this? Start an Anaconda command prompt and run conda install --force-reinstall defaults::conda. And then try to update Navigator.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/ContinuumIO/anaconda-issues/issues/12643#issuecomment-973151683 , or unsubscribe https://github.com/notifications/unsubscribe-auth/ALAJMP2ASXDVNLVZ4GTUDKDUMVCEBANCNFSM5FCHDS7A . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub . https://github.com/notifications/beacon/ALAJMP2T4T4QZWWAT77LBEDUMVCEBA5CNFSM5FCHDS7KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOHIAR3QY.gif

promethean commented 2 years ago

Yep - having the same problems as everyone above.

tony352 commented 2 years ago

I'm also having this issue :(.

qyk8463534 commented 2 years ago

I think the solution might be in https://docs.anaconda.com/anaconda/install/update-version/. According to issues 11966, this solution works. (I didn't try it) https://github.com/ContinuumIO/anaconda-issues/issues/11966

sblandin2018 commented 2 years ago

I tried the solution linked by @qyk8463534, and it worked for me.

It seems that the upgrade problem is linked to the Anaconda metapackage.

For details you can refer to issue #11966, here I'll show what has worked for me. From an Anaconda command prompt write:

conda install anaconda=custom
conda update conda

Then I launched Anaconda Navigator and the upgrade process ended with success

tony352 commented 2 years ago

Thank you all for your help!

When I entered in conda install anaconda=custom, I still found problems.

Part of the problem--which I cannot work out (I'm still new to unix/linux) is that my terminal doesn't recognise the 'conda' command. I have to go to the directory where it's stored (Users/myname/opt/anaconda3/bin/) and type in ./conda for the conda command to work.

When I do, I get the following message:

./conda install conda=custom

Collecting package metadata (current_repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

Collecting package metadata (repodata.json): done

Solving environment: failed with initial frozen solve. Retrying with flexible solve.

PackagesNotFoundError: The following packages are not available from current channels:

Current channels:

To search for alternate channels that may provide the conda package you're

looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

@.*** bin %

I have tried adding in the path in my shell configuration file (zprofile), as follows:

export PATH="/Users/myname/opt/anaconda3/bin/"

However, doing this ruins the shell; none of the common commands (like 'ls') work. I'm clearly adding the path in incorrectly but I'm not sure the right way. Can anyone advise?

Thanks in advance for any thoughts you might have!

Tony

On Thu, 23 Dec 2021 at 07:51, sblandin2018 @.***> wrote:

I tried the solution linked by @qyk8463534 https://github.com/qyk8463534, and it worked for me.

It seems that the upgrade problem is linked to the Anaconda metapackage.

For details you can refer to issue #11966 https://github.com/ContinuumIO/anaconda-issues/issues/11966, here I'll show what has worked for me. From an Anaconda command prompt write:

conda install anaconda=custom conda update conda

Then I launched Anaconda Navigator and the upgrade process ends with success

— Reply to this email directly, view it on GitHub https://github.com/ContinuumIO/anaconda-issues/issues/12643#issuecomment-1000110757, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQRDRK4OP3VLLBGZINMGSITUSLIIRANCNFSM5FCHDS7A . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you are subscribed to this thread.Message ID: @.***>

qyk8463534 commented 2 years ago

@tony352 I came across a similar problem.

These links might be helpful. ISSUE#9367 serval possible solution

Besides, my current solution to issue#12643 is in 3 steps:

  1. Uninstallation
  2. install the newest anaconda (ISSUE#9367 happened in the base environment)
  3. create a new environment
  4. install packages in the new environment (ISSUE#9367 dodged but not solved)
tony352 commented 2 years ago

That did it -- thank you! :)

Tony

On Thu, 23 Dec 2021 at 11:43, qyk8463534 @.***> wrote:

@tony352 https://github.com/tony352 I came across a similar problem.

These links might be helpful. ISSUE#9367 https://github.com/conda/conda/issues/9367 serval possible solution https://exerror.com/solving-environment-failed-with-initial-frozen-solve-retrying-with-flexible-solve/

Besides, my current solution to issue#12643 is in 3 steps:

  1. Uninstallation
  2. install the newest anaconda (ISSUE#9367 happened in the base environment)
  3. create a new environment
  4. install packages in the new environment (ISSUE#9367 dodged but not solved)

— Reply to this email directly, view it on GitHub https://github.com/ContinuumIO/anaconda-issues/issues/12643#issuecomment-1000247807, or unsubscribe https://github.com/notifications/unsubscribe-auth/AQRDRKZPSLUTLGTAJNJMDKDUSMDPBANCNFSM5FCHDS7A . Triage notifications on the go with GitHub Mobile for iOS https://apps.apple.com/app/apple-store/id1477376905?ct=notification-email&mt=8&pt=524675 or Android https://play.google.com/store/apps/details?id=com.github.android&referrer=utm_campaign%3Dnotification-email%26utm_medium%3Demail%26utm_source%3Dgithub.

You are receiving this because you were mentioned.Message ID: @.***>

Faluhelyi commented 2 years ago

I tried the solution linked by @qyk8463534, and it worked for me.

It seems that the upgrade problem is linked to the Anaconda metapackage.

For details you can refer to issue #11966, here I'll show what has worked for me. From an Anaconda command prompt write:

conda install anaconda=custom
conda update conda

Then I launched Anaconda Navigator and the upgrade process ended with success

It worked for me, ty!!

datatalking commented 2 years ago

I'm experiencing the same issue, currently trying the @qyk8463534 solution, I've tried the first two with no resolution. Looks like I have to remove anaconda for the fourth time this year, so Anaconda needs to know I've had to uninstall and reinstall it four times this year.

Anaconda used to be so good, but the last few years it causes more problems every time I have to delete it because they can't figure out how to uninstall their own code?

Configure Navigator results

[main]
name = Anaconda Navigator
first_run = False
hide_quit_dialog = True
hide_running_apps_dialog = False
hide_update_dialog = True
hide_offline_dialog = False
first_time_offline = False
last_status_is_offline = False
running_apps_to_close = ['anaconda-fusion', 'notebook', 'spyder']
add_default_channels = False
offline_mode = False
default_env = '/Users/owner/opt/anaconda3'
conda_active_channels = None
logged_brand = 'Anaconda.org'
logged_api_url = 'https://api.anaconda.org'
nucleus_base_url = https://anaconda.cloud
anaconda_api_url = https://api.anaconda.org
team_edition_api_url = None
team_edition_token = None
team_edition_token_id = None
enterprise_4_repo_api_url = None
commercial_edition_url = https://repo.anaconda.cloud
ssl_verification = True
ssl_certificate = None
default_anaconda_api_url = None
default_ssl_certificate = None
projects_path = None
active_project_path = None
enable_high_dpi_scaling = False
provide_analytics = True
show_application_environments = True
show_application_launch_errors = True
twitter_url = https://twitter.com/AnacondaInc
youtube_url = https://www.youtube.com/c/continuumio
github_url = https://github.com/ContinuumIO
advertisement_url = https://www.anaconda.com/api/navigator
vscode_path = /Users/owner/Applications/Visual Studio Code.app
pycharm_ce_path = 
pycharm_pro_path = 
show_startup = False
version = 2.0.0
geo = b'\x80\x04\x95q\x00\x00\x00\x00\x00\x00\x00\x8c\x03sip\x94\x8c\x0e_unpickle_type\x94\x93\x94\x8c\x0cPyQt5.QtCore\x94\x8c\nQByteArray\x94C2\x01\xd9\xd0\xcb\x00\x02\x00\x00\x00\x00\x02\x8b\x00\x00\x02\x0b\x00\x00\x08Y\x00\x00\x05\x82\x00\x00\x02\x8b\x00\x00\x02!\x00\x00\x08Y\x00\x00\x05\x82\x00\x00\x00\x00\x00\x00\x00\x00\n\x00\x94\x85\x94\x87\x94R\x94.'

[home]
vscode_enable = True
pycharm_enable = False

[checkboxes]
event = True
forum = True
social = True
documentation = True
training = False
video = True
webinar = True

[ssl]
trusted_servers = []

configure conda results

ssl_verify: true
channels:
  - defaults
proxy_servers:
  http: http://id:pw@proxyserver:port
  https: https://id:pw@proxyserver:port
$ conda update conda
Collecting package metadata (current_repodata.json): failed

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/adapters.py", line 412, in send
        conn = self.get_connection(request.url, proxies)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/adapters.py", line 305, in get_connection
        proxy_url = parse_url(proxy)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/urllib3/util/url.py", line 199, in parse_url
        raise LocationParseError(url)
    urllib3.exceptions.LocationParseError: Failed to parse: proxyserver:port

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/exceptions.py", line 1080, in __call__
        return func(*args, **kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/main.py", line 84, in _main
        exit_code = do_call(args, p)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/conda_argparse.py", line 83, in do_call
        return getattr(module, func_name)(args, parser)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/main_update.py", line 20, in execute
        install(args, parser, 'update')
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/install.py", line 259, in install
        unlink_link_transaction = solver.solve_for_transaction(
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 114, in solve_for_transaction
        unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 157, in solve_for_diff
        final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 262, in solve_final_state
        ssc = self._collect_all_metadata(ssc)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/common/io.py", line 88, in decorated
        return f(*args, **kwds)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 425, in _collect_all_metadata
        index, r = self._prepare(prepared_specs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 1020, in _prepare
        reduced_index = get_reduced_index(self.prefix, self.channels,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/index.py", line 288, in get_reduced_index
        new_records = SubdirData.query_all(spec, channels=channels, subdirs=subdirs,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 140, in query_all
        result = tuple(concat(executor.map(subdir_query, channel_urls)))
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/_base.py", line 611, in result_iterator
        yield fs.pop().result()
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/_base.py", line 439, in result
        return self.__get_result()
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/_base.py", line 388, in __get_result
        raise self._exception
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/thread.py", line 57, in run
        result = self.fn(*self.args, **self.kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 132, in <lambda>
        subdir_query = lambda url: tuple(SubdirData(Channel(url), repodata_fn=repodata_fn).query(
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 145, in query
        self.load()
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 210, in load
        _internal_state = self._load()
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 375, in _load
        raw_repodata_str = fetch_repodata_remote_request(
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 701, in fetch_repodata_remote_request
        resp = session.get(join_url(url, filename), headers=headers, proxies=session.proxies,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/sessions.py", line 546, in get
        return self.request('GET', url, **kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/sessions.py", line 533, in request
        resp = self.send(prep, **send_kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/sessions.py", line 646, in send
        r = adapter.send(request, **kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/adapters.py", line 414, in send
        raise InvalidURL(e, request=request)
    requests.exceptions.InvalidURL: Failed to parse: proxyserver:port

`$ /Users/owner/opt/anaconda3/bin/conda update conda`

  environment variables:
                 CIO_TEST=<not set>
        CONDA_DEFAULT_ENV=base
                CONDA_EXE=/Users/owner/opt/anaconda3/bin/conda
             CONDA_PREFIX=/Users/owner/opt/anaconda3
    CONDA_PROMPT_MODIFIER=(base)
         CONDA_PYTHON_EXE=/Users/owner/opt/anaconda3/bin/python
               CONDA_ROOT=/Users/owner/opt/anaconda3
              CONDA_SHLVL=1
           CURL_CA_BUNDLE=<not set>
                     PATH=/Users/owner/opt/anaconda3/bin:/Users/owner/opt/anaconda3/bin:/Users/o
                          wner/opt/anaconda3/condabin:/usr/local/anaconda3/bin:/opt/local/bin:/o
                          pt/local/sbin:/Users/owner/anaconda3/bin:/usr/local/mysql/bin:/Users/o
                          wner/miniconda3/bin:/Users/owner/bin:/usr/local/bin:/usr/bin:/bin:/usr
                          /sbin:/sbin:/opt/X11/bin:/Applications/Wireshark.app/Contents/MacOS
         PYTHONIOENCODING=UTF-8
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>

     active environment : base
    active env location : /Users/owner/opt/anaconda3
            shell level : 1
       user config file : /Users/owner/.condarc
 populated config files : /Users/owner/.condarc
          conda version : 4.11.0
    conda-build version : 3.21.4
         python version : 3.8.8.final.0
       virtual packages : __osx=10.13.6=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /Users/owner/opt/anaconda3  (writable)
      conda av data dir : /Users/owner/opt/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/owner/opt/anaconda3/pkgs
                          /Users/owner/.conda/pkgs
       envs directories : /Users/owner/opt/anaconda3/envs
                          /Users/owner/.conda/envs
               platform : osx-64
             user-agent : conda/4.11.0 requests/2.21.0 CPython/3.8.8 Darwin/17.7.0 OSX/10.13.6
                UID:GID : 501:20
             netrc file : /Users/owner/.netrc
           offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

If submitted, this report will be used by core maintainers to improve
future releases of conda.
Would you like conda to send this report to the core maintainers?

[y/N]: y
Upload did not complete.

Thank you for helping to improve conda.
Opt-in to always sending reports (and not see this message again)
by running

    $ conda config --set report_errors true

(base) 

Now I've also tried the second version same result - an unexpected error has occurred report below

$ conda update anaconda
Collecting package metadata (current_repodata.json): failed

# >>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

    Traceback (most recent call last):
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/adapters.py", line 412, in send
        conn = self.get_connection(request.url, proxies)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/adapters.py", line 305, in get_connection
        proxy_url = parse_url(proxy)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/urllib3/util/url.py", line 199, in parse_url
        raise LocationParseError(url)
    urllib3.exceptions.LocationParseError: Failed to parse: proxyserver:port

    During handling of the above exception, another exception occurred:

    Traceback (most recent call last):
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/exceptions.py", line 1080, in __call__
        return func(*args, **kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/main.py", line 84, in _main
        exit_code = do_call(args, p)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/conda_argparse.py", line 83, in do_call
        return getattr(module, func_name)(args, parser)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/main_update.py", line 20, in execute
        install(args, parser, 'update')
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/cli/install.py", line 259, in install
        unlink_link_transaction = solver.solve_for_transaction(
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 114, in solve_for_transaction
        unlink_precs, link_precs = self.solve_for_diff(update_modifier, deps_modifier,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 157, in solve_for_diff
        final_precs = self.solve_final_state(update_modifier, deps_modifier, prune, ignore_pinned,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 262, in solve_final_state
        ssc = self._collect_all_metadata(ssc)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/common/io.py", line 88, in decorated
        return f(*args, **kwds)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 425, in _collect_all_metadata
        index, r = self._prepare(prepared_specs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/solve.py", line 1020, in _prepare
        reduced_index = get_reduced_index(self.prefix, self.channels,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/index.py", line 288, in get_reduced_index
        new_records = SubdirData.query_all(spec, channels=channels, subdirs=subdirs,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 140, in query_all
        result = tuple(concat(executor.map(subdir_query, channel_urls)))
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/_base.py", line 611, in result_iterator
        yield fs.pop().result()
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/_base.py", line 439, in result
        return self.__get_result()
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/_base.py", line 388, in __get_result
        raise self._exception
      File "/Users/owner/opt/anaconda3/lib/python3.8/concurrent/futures/thread.py", line 57, in run
        result = self.fn(*self.args, **self.kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 132, in <lambda>
        subdir_query = lambda url: tuple(SubdirData(Channel(url), repodata_fn=repodata_fn).query(
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 145, in query
        self.load()
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 210, in load
        _internal_state = self._load()
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 375, in _load
        raw_repodata_str = fetch_repodata_remote_request(
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/conda/core/subdir_data.py", line 701, in fetch_repodata_remote_request
        resp = session.get(join_url(url, filename), headers=headers, proxies=session.proxies,
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/sessions.py", line 546, in get
        return self.request('GET', url, **kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/sessions.py", line 533, in request
        resp = self.send(prep, **send_kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/sessions.py", line 646, in send
        r = adapter.send(request, **kwargs)
      File "/Users/owner/opt/anaconda3/lib/python3.8/site-packages/requests/adapters.py", line 414, in send
        raise InvalidURL(e, request=request)
    requests.exceptions.InvalidURL: Failed to parse: proxyserver:port

`$ /Users/owner/opt/anaconda3/bin/conda update anaconda`

  environment variables:
                 CIO_TEST=<not set>
        CONDA_DEFAULT_ENV=base
                CONDA_EXE=/Users/owner/opt/anaconda3/bin/conda
             CONDA_PREFIX=/Users/owner/opt/anaconda3
    CONDA_PROMPT_MODIFIER=(base)
         CONDA_PYTHON_EXE=/Users/owner/opt/anaconda3/bin/python
               CONDA_ROOT=/Users/owner/opt/anaconda3
              CONDA_SHLVL=1
           CURL_CA_BUNDLE=<not set>
                     PATH=/Users/owner/opt/anaconda3/bin:/Users/owner/opt/anaconda3/bin:/Users/o
                          wner/opt/anaconda3/condabin:/usr/local/anaconda3/bin:/opt/local/bin:/o
                          pt/local/sbin:/Users/owner/anaconda3/bin:/usr/local/mysql/bin:/Users/o
                          wner/miniconda3/bin:/Users/owner/bin:/usr/local/bin:/usr/bin:/bin:/usr
                          /sbin:/sbin:/opt/X11/bin:/Applications/Wireshark.app/Contents/MacOS
         PYTHONIOENCODING=UTF-8
       REQUESTS_CA_BUNDLE=<not set>
            SSL_CERT_FILE=<not set>

     active environment : base
    active env location : /Users/owner/opt/anaconda3
            shell level : 1
       user config file : /Users/owner/.condarc
 populated config files : /Users/owner/.condarc
          conda version : 4.11.0
    conda-build version : 3.21.4
         python version : 3.8.8.final.0
       virtual packages : __osx=10.13.6=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /Users/owner/opt/anaconda3  (writable)
      conda av data dir : /Users/owner/opt/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/owner/opt/anaconda3/pkgs
                          /Users/owner/.conda/pkgs
       envs directories : /Users/owner/opt/anaconda3/envs
                          /Users/owner/.conda/envs
               platform : osx-64
             user-agent : conda/4.11.0 requests/2.21.0 CPython/3.8.8 Darwin/17.7.0 OSX/10.13.6
                UID:GID : 501:20
             netrc file : /Users/owner/.netrc
           offline mode : False

An unexpected error has occurred. Conda has prepared the above report.

If submitted, this report will be used by core maintainers to improve
future releases of conda.
Would you like conda to send this report to the core maintainers?

[y/N]: y
Upload did not complete.

Thank you for helping to improve conda.
Opt-in to always sending reports (and not see this message again)
by running

    $ conda config --set report_errors true

(base)