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Updating anaconda navigator gives error #13074

Open vid-akella opened 2 years ago

vid-akella commented 2 years ago

Checklist

What happened?

I tried updating Navigator by "conda update anaconda" on command line of Mac terminal. The update said "done" without any errors. When I tried to open the Navigator GUI, I got this error message, as pasted below:

Navigator Error An unexpected error occurred on Navigator start-up

Report Please report this issue in the anaconda issue tracker

Main Error failed to run: 'conda info --json': "FileNotFoundError(2, 'No such file or directory')" Traceback Traceback (most recent call last): File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/conda_api.py", line 77, in _call_conda (p, stdout_lines, stderr_lines) = streaming_popen.popen(cmd_list, File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/streaming_popen.py", line 83, in popen p = logged_subprocess.Popen(args, stdout=subprocess.PIPE, stderr=subprocess.PIPE, kwargs) File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/logged_subprocess.py", line 27, in Popen return subprocess.Popen(args=args, kwargs) File "/Users/vidya/opt/anaconda3/lib/python3.8/subprocess.py", line 854, in init self._execute_child(args, executable, preexec_fn, close_fds, File "/Users/vidya/opt/anaconda3/lib/python3.8/subprocess.py", line 1702, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'conda'

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/exceptions.py", line 75, in exception_handler return_value = func(*args, **kwargs) File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/app/start.py", line 151, in start_app window = run_app(splash) File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/app/start.py", line 65, in run_app window = MainWindow(splash=splash, tab_project=False) File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/widgets/main_window.py", line 170, in init self.api = AnacondaAPI() File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/api/anaconda_api.py", line 1600, in AnacondaAPI ANACONDA_API = _AnacondaAPI() File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/api/anaconda_api.py", line 81, in init self._project_api = ProjectAPI() File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/api/project_api.py", line 182, in ProjectAPI PROJECT_API = _ProjectAPIWrapper() File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_navigator/api/project_api.py", line 62, in init from anaconda_project.api import AnacondaProject File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/api.py", line 24, in from anaconda_project import prepare, project, provide, project_ops File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/prepare.py", line 19, in from anaconda_project.internal import conda_api File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/conda_api.py", line 643, in _default_platforms_with_current = tuple(sorted(list(set(default_platforms + (current_platform(), ))))) File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/conda_api.py", line 639, in current_platform conda_info = info() File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/conda_api.py", line 126, in info return _call_and_parse_json(['info', '--json'], platform=platform) File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/conda_api.py", line 113, in _call_and_parse_json out = _call_conda(extra_args, json_mode=True, platform=platform) File "/Users/vidya/opt/anaconda3/lib/python3.8/site-packages/anaconda_project/internal/conda_api.py", line 82, in _call_conda raise CondaError("failed to run: %r: %r" % (command_in_errors, repr(e))) anaconda_project.internal.conda_api.CondaError: failed to run: 'conda info --json': "FileNotFoundError(2, 'No such file or directory')"

Conda info

active environment : base
    active env location : /Users/vidya/opt/anaconda3
            shell level : 1
       user config file : /Users/vidya/.condarc
 populated config files : /Users/vidya/.condarc
          conda version : 22.9.0
    conda-build version : 3.20.5
         python version : 3.8.5.final.0
       virtual packages : __osx=10.16=0
                          __unix=0=0
                          __archspec=1=x86_64
       base environment : /Users/vidya/opt/anaconda3  (writable)
      conda av data dir : /Users/vidya/opt/anaconda3/etc/conda
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /Users/vidya/opt/anaconda3/pkgs
                          /Users/vidya/.conda/pkgs
       envs directories : /Users/vidya/opt/anaconda3/envs
                          /Users/vidya/.conda/envs
               platform : osx-64
             user-agent : conda/22.9.0 requests/2.28.1 CPython/3.8.5 Darwin/20.6.0 OSX/10.16
                UID:GID : 501:20
             netrc file : None
           offline mode : False

Conda config

==> /Users/vidya/.condarc <==
ssl_verify: True
channels:
  - defaults

Conda list

# packages in environment at /Users/vidya/opt/anaconda3:
#
# Name                    Version                   Build  Channel
_anaconda_depends         2022.05                  py38_0    defaults
_ipyw_jlab_nb_ext_conf    0.1.0                    py38_0    defaults
_r-mutex                  1.0.0               anacondar_1    defaults
aiohttp                   3.8.1            py38hca72f7f_1    defaults
aiosignal                 1.2.0              pyhd3eb1b0_0    defaults
alabaster                 0.7.12             pyhd3eb1b0_0    defaults
anaconda                  custom                   py38_1    defaults
anaconda-client           1.11.0           py38hecd8cb5_0    defaults
anaconda-navigator        1.10.0                   py38_0    defaults
anaconda-project          0.11.1           py38hecd8cb5_0    defaults
anyio                     3.5.0            py38hecd8cb5_0    defaults
appdirs                   1.4.4              pyhd3eb1b0_0    defaults
applaunchservices         0.3.0            py38hecd8cb5_0    defaults
appnope                   0.1.2           py38hecd8cb5_1001    defaults
appscript                 1.1.2            py38h9ed2024_0    defaults
argon2-cffi               21.3.0             pyhd3eb1b0_0    defaults
argon2-cffi-bindings      21.2.0           py38hca72f7f_0    defaults
arrow                     1.2.2              pyhd3eb1b0_0    defaults
astroid                   2.11.7           py38hecd8cb5_0    defaults
astropy                   5.1              py38h67323c0_0    defaults
asttokens                 2.0.5              pyhd3eb1b0_0    defaults
async-timeout             4.0.2            py38hecd8cb5_0    defaults
atomicwrites              1.4.0                      py_0    defaults
attrs                     21.4.0             pyhd3eb1b0_0    defaults
automat                   20.2.0                     py_0    defaults
autopep8                  1.6.0              pyhd3eb1b0_1    defaults
babel                     2.9.1              pyhd3eb1b0_0    defaults
backcall                  0.2.0              pyhd3eb1b0_0    defaults
backports                 1.1                pyhd3eb1b0_0    defaults
backports.functools_lru_cache 1.6.4              pyhd3eb1b0_0    defaults
backports.tempfile        1.0                pyhd3eb1b0_1    defaults
backports.weakref         1.0.post1                  py_1    defaults
bcrypt                    3.2.0            py38hca72f7f_1    defaults
beautifulsoup4            4.11.1           py38hecd8cb5_0    defaults
binaryornot               0.4.4              pyhd3eb1b0_1    defaults
bitarray                  2.5.1            py38hca72f7f_0    defaults
bkcharts                  0.2              py38hecd8cb5_1    defaults
black                     22.6.0           py38hecd8cb5_0    defaults
blas                      1.0                         mkl    defaults
bleach                    4.1.0              pyhd3eb1b0_0    defaults
blosc                     1.21.0               h8346a28_1    defaults
bokeh                     2.4.3            py38hecd8cb5_0    defaults
boto3                     1.24.28          py38hecd8cb5_0    defaults
botocore                  1.27.28          py38hecd8cb5_0    defaults
bottleneck                1.3.5            py38h67323c0_0    defaults
brotli                    1.0.9                hca72f7f_7    defaults
brotli-bin                1.0.9                hca72f7f_7    defaults
brotlipy                  0.7.0           py38h9ed2024_1003    defaults
brunsli                   0.1                  h23ab428_0    defaults
bzip2                     1.0.8                h1de35cc_0    defaults
c-ares                    1.18.1               hca72f7f_0    defaults
ca-certificates           2022.07.19           hecd8cb5_0    defaults
cachetools                4.2.2              pyhd3eb1b0_0    defaults
certifi                   2022.9.24        py38hecd8cb5_0    defaults
cffi                      1.15.1           py38hc55c11b_0    defaults
cfitsio                   3.470                hee0f690_6    defaults
chardet                   4.0.0           py38hecd8cb5_1003    defaults
charls                    2.2.0                h23ab428_0    defaults
charset-normalizer        2.0.4              pyhd3eb1b0_0    defaults
click                     8.0.4            py38hecd8cb5_0    defaults
cloudpickle               2.0.0              pyhd3eb1b0_0    defaults
clyent                    1.2.2                    py38_1    defaults
colorama                  0.4.5            py38hecd8cb5_0    defaults
colorcet                  3.0.0            py38hecd8cb5_0    defaults
conda                     22.9.0           py38hecd8cb5_0    defaults
conda-build               3.20.5                   py38_1    defaults
conda-content-trust       0.1.3            py38hecd8cb5_0    defaults
conda-env                 2.6.0                         1    defaults
conda-pack                0.6.0              pyhd3eb1b0_0    defaults
conda-package-handling    1.9.0            py38hca72f7f_0    defaults
conda-token               0.4.0              pyhd3eb1b0_0    defaults
conda-verify              3.4.2                      py_1    defaults
constantly                15.1.0             pyh2b92418_0    defaults
cookiecutter              1.7.3              pyhd3eb1b0_0    defaults
cryptography              37.0.1           py38hf6deb26_0    defaults
cssselect                 1.1.0              pyhd3eb1b0_0    defaults
curl                      7.84.0               hca72f7f_0    defaults
cycler                    0.11.0             pyhd3eb1b0_0    defaults
cython                    0.29.32          py38he9d5cce_0    defaults
cytoolz                   0.11.0           py38haf1e3a3_0    defaults
daal4py                   2021.6.0         py38h01d92e1_1    defaults
dal                       2021.6.0           haf03e11_929    defaults
dask                      2022.2.1           pyhd3eb1b0_0    defaults
dask-core                 2022.2.1           pyhd3eb1b0_0    defaults
dataclasses               0.8                pyh6d0b6a4_7    defaults
datashader                0.14.1           py38hecd8cb5_0    defaults
datashape                 0.5.4            py38hecd8cb5_1    defaults
dbus                      1.13.18              h18a8e69_0    defaults
debugpy                   1.5.1            py38he9d5cce_0    defaults
decorator                 5.1.1              pyhd3eb1b0_0    defaults
defusedxml                0.7.1              pyhd3eb1b0_0    defaults
diff-match-patch          20200713           pyhd3eb1b0_0    defaults
dill                      0.3.4              pyhd3eb1b0_0    defaults
distributed               2022.2.1           pyhd3eb1b0_0    defaults
docutils                  0.18.1           py38hecd8cb5_3    defaults
entrypoints               0.4              py38hecd8cb5_0    defaults
et_xmlfile                1.1.0            py38hecd8cb5_0    defaults
executing                 0.8.3              pyhd3eb1b0_0    defaults
expat                     2.4.9                he9d5cce_0    defaults
filelock                  3.6.0              pyhd3eb1b0_0    defaults
flake8                    4.0.1              pyhd3eb1b0_1    defaults
flask                     2.1.3            py38hecd8cb5_0    defaults
fonttools                 4.25.0             pyhd3eb1b0_0    defaults
freetype                  2.11.0               hd8bbffd_0    defaults
frozenlist                1.2.0            py38hca72f7f_0    defaults
fsspec                    2022.7.1         py38hecd8cb5_0    defaults
future                    0.18.2                   py38_1    defaults
gensim                    4.1.2            py38he9d5cce_0    defaults
gettext                   0.21.0               h7535e17_0    defaults
giflib                    5.2.1                haf1e3a3_0    defaults
glib                      2.69.1               h8346a28_1    defaults
glob2                     0.7                pyhd3eb1b0_0    defaults
gmp                       6.2.1                he9d5cce_3    defaults
gmpy2                     2.1.2            py38hd5de756_0    defaults
google-api-core           2.10.1           py38hecd8cb5_0    defaults
google-auth               2.6.0              pyhd3eb1b0_0    defaults
google-cloud-core         2.2.2              pyhd3eb1b0_0    defaults
google-cloud-storage      1.43.0           py38hecd8cb5_0    defaults
google-crc32c             1.1.2            py38h9ed2024_0    defaults
google-resumable-media    1.3.1              pyhd3eb1b0_1    defaults
googleapis-common-protos  1.56.4           py38hecd8cb5_0    defaults
greenlet                  1.1.1            py38h23ab428_0    defaults
grpcio                    1.42.0           py38ha29bfda_0    defaults
gsl                       2.7.1                hdbe807d_1    defaults
gst-plugins-base          1.14.0               h4180768_2    defaults
gstreamer                 1.14.0               h0fc69c2_2    defaults
h5py                      2.10.0           py38h3134771_0    defaults
hdf5                      1.10.4               hfa1e0ec_0    defaults
heapdict                  1.0.1              pyhd3eb1b0_0    defaults
holoviews                 1.15.0           py38hecd8cb5_0    defaults
hvplot                    0.8.0            py38hecd8cb5_0    defaults
hyperlink                 21.0.0             pyhd3eb1b0_0    defaults
icu                       58.2                 h0a44026_3    defaults
idna                      3.3                pyhd3eb1b0_0    defaults
imagecodecs               2021.8.26        py38h0f85e6e_1    defaults
imageio                   2.19.3           py38hecd8cb5_0    defaults
imagesize                 1.4.1            py38hecd8cb5_0    defaults
importlib-metadata        4.11.3           py38hecd8cb5_0    defaults
importlib_metadata        4.11.3               hd3eb1b0_0    defaults
importlib_resources       5.2.0              pyhd3eb1b0_1    defaults
incremental               21.3.0             pyhd3eb1b0_0    defaults
inflection                0.5.1            py38hecd8cb5_0    defaults
iniconfig                 1.1.1              pyhd3eb1b0_0    defaults
intake                    0.6.5              pyhd3eb1b0_0    defaults
intel-openmp              2021.4.0          hecd8cb5_3538    defaults
intervaltree              3.1.0              pyhd3eb1b0_0    defaults
ipykernel                 6.15.2           py38hecd8cb5_0    defaults
ipython                   7.31.1           py38hecd8cb5_1    defaults
ipython_genutils          0.2.0              pyhd3eb1b0_1    defaults
ipywidgets                7.6.5              pyhd3eb1b0_1    defaults
isort                     5.9.3              pyhd3eb1b0_0    defaults
itemadapter               0.3.0              pyhd3eb1b0_0    defaults
itemloaders               1.0.4              pyhd3eb1b0_1    defaults
itsdangerous              2.0.1              pyhd3eb1b0_0    defaults
jdcal                     1.4.1              pyhd3eb1b0_0    defaults
jedi                      0.18.1           py38hecd8cb5_1    defaults
jellyfish                 0.9.0            py38hca72f7f_0    defaults
jinja2                    3.0.3              pyhd3eb1b0_0    defaults
jinja2-time               0.2.0              pyhd3eb1b0_3    defaults
jmespath                  0.10.0             pyhd3eb1b0_0    defaults
joblib                    1.1.0              pyhd3eb1b0_0    defaults
jpeg                      9e                   hca72f7f_0    defaults
jq                        1.6               h9ed2024_1000    defaults
json5                     0.9.6              pyhd3eb1b0_0    defaults
jsonschema                4.16.0           py38hecd8cb5_0    defaults
jupyter                   1.0.0            py38hecd8cb5_8    defaults
jupyter_client            7.3.5            py38hecd8cb5_0    defaults
jupyter_console           6.4.3              pyhd3eb1b0_0    defaults
jupyter_core              4.11.1           py38hecd8cb5_0    defaults
jupyter_server            1.18.1           py38hecd8cb5_0    defaults
jupyterlab                3.4.4            py38hecd8cb5_0    defaults
jupyterlab_pygments       0.1.2                      py_0    defaults
jupyterlab_server         2.15.2           py38hecd8cb5_0    defaults
jupyterlab_widgets        1.0.0              pyhd3eb1b0_1    defaults
jxrlib                    1.1                  haf1e3a3_2    defaults
keyring                   23.4.0           py38hecd8cb5_0    defaults
kiwisolver                1.4.2            py38he9d5cce_0    defaults
krb5                      1.19.2               hcd88c3b_0    defaults
lazy-object-proxy         1.6.0            py38h9ed2024_0    defaults
lcms2                     2.12                 hf1fd2bf_0    defaults
lerc                      3.0                  he9d5cce_0    defaults
libaec                    1.0.4                hb1e8313_1    defaults
libarchive                3.6.1                he336d3b_0    defaults
libbrotlicommon           1.0.9                hca72f7f_7    defaults
libbrotlidec              1.0.9                hca72f7f_7    defaults
libbrotlienc              1.0.9                hca72f7f_7    defaults
libclang                  12.0.0          default_hbc2896b_2    defaults
libcrc32c                 1.1.1                hb1e8313_2    defaults
libcurl                   7.84.0               h6dfd666_0    defaults
libcxx                    14.0.6               h9765a3e_0    defaults
libdeflate                1.8                  h9ed2024_5    defaults
libedit                   3.1.20210910         hca72f7f_0    defaults
libev                     4.33                 h9ed2024_1    defaults
libffi                    3.3                  hb1e8313_2    defaults
libgcc                    4.8.5               hdbeacc1_10    defaults
libgfortran               3.0.1                h93005f0_2    defaults
libiconv                  1.16                 hca72f7f_2    defaults
libidn2                   2.3.2                h9ed2024_0    defaults
liblief                   0.11.5               he9d5cce_1    defaults
libllvm11                 11.1.0               h46f1229_6    defaults
libllvm12                 12.0.0               h9b2ccf5_3    defaults
libnghttp2                1.46.0               ha29bfda_0    defaults
libpng                    1.6.37               ha441bb4_0    defaults
libpq                     12.9                 h1c9f633_3    defaults
libprotobuf               3.20.1               h8346a28_0    defaults
libsodium                 1.0.18               h1de35cc_0    defaults
libspatialindex           1.9.3                h23ab428_0    defaults
libssh2                   1.10.0               h0a4fc7d_0    defaults
libtiff                   4.4.0                h2ef1027_0    defaults
libunistring              0.9.10               h9ed2024_0    defaults
libwebp                   1.2.4                h56c3ce4_0    defaults
libwebp-base              1.2.4                hca72f7f_0    defaults
libxml2                   2.9.14               hbf8cd5e_0    defaults
libxslt                   1.1.35               h5b33f42_0    defaults
libzopfli                 1.0.3                hb1e8313_0    defaults
llvm-openmp               14.0.6               h0dcd299_0    defaults
llvmlite                  0.38.0           py38h8346a28_0    defaults
locket                    1.0.0            py38hecd8cb5_0    defaults
lxml                      4.9.1            py38h65b224f_0    defaults
lz4-c                     1.9.3                h23ab428_1    defaults
lzo                       2.10                 haf1e3a3_2    defaults
markdown                  3.3.4            py38hecd8cb5_0    defaults
markupsafe                2.1.1            py38hca72f7f_0    defaults
matplotlib                3.5.2            py38hecd8cb5_0    defaults
matplotlib-base           3.5.2            py38hfb0c5b7_0    defaults
matplotlib-inline         0.1.6            py38hecd8cb5_0    defaults
mccabe                    0.7.0              pyhd3eb1b0_0    defaults
mistune                   0.8.4           py38h1de35cc_1001    defaults
mkl                       2021.4.0           hecd8cb5_637    defaults
mkl-service               2.4.0            py38h9ed2024_0    defaults
mkl_fft                   1.3.1            py38h4ab4a9b_0    defaults
mkl_random                1.2.2            py38hb2f4e1b_0    defaults
mock                      4.0.3              pyhd3eb1b0_0    defaults
mpc                       1.1.0                h6ef4df4_1    defaults
mpfr                      4.0.2                h9066e36_1    defaults
mpi                       1.0                       mpich    defaults
mpich                     3.3.2                hc856adb_0    defaults
mpmath                    1.2.1            py38hecd8cb5_0    defaults
msgpack-python            1.0.3            py38haf03e11_0    defaults
multidict                 6.0.2            py38hca72f7f_0    defaults
multipledispatch          0.6.0                    py38_0    defaults
munkres                   1.1.4                      py_0    defaults
mypy_extensions           0.4.3            py38hecd8cb5_1    defaults
navigator-updater         0.2.1                    py38_0    defaults
nb_conda                  2.2.1                    py38_1    defaults
nb_conda_kernels          2.3.1            py38hecd8cb5_0    defaults
nbclassic                 0.3.5              pyhd3eb1b0_0    defaults
nbclient                  0.5.13           py38hecd8cb5_0    defaults
nbconvert                 6.4.4            py38hecd8cb5_0    defaults
nbformat                  5.5.0            py38hecd8cb5_0    defaults
ncurses                   6.3                  hca72f7f_3    defaults
nest-asyncio              1.5.5            py38hecd8cb5_0    defaults
networkx                  2.8.4            py38hecd8cb5_0    defaults
nltk                      3.7                pyhd3eb1b0_0    defaults
nose                      1.3.7           pyhd3eb1b0_1008    defaults
notebook                  6.4.12           py38hecd8cb5_0    defaults
nspr                      4.33                 he9d5cce_0    defaults
nss                       3.74                 h47edf6a_0    defaults
numba                     0.55.1           py38hae1ba45_0    defaults
numexpr                   2.8.3            py38h2e5f0a9_0    defaults
numpy                     1.21.5           py38h2e5f0a9_3    defaults
numpy-base                1.21.5           py38h3b1a694_3    defaults
numpydoc                  1.4.0            py38hecd8cb5_0    defaults
olefile                   0.46               pyhd3eb1b0_0    defaults
oniguruma                 6.9.7.1              h9ed2024_0    defaults
openjpeg                  2.4.0                h66ea3da_0    defaults
openpyxl                  3.0.10           py38hca72f7f_0    defaults
openssl                   1.1.1q               hca72f7f_0    defaults
packaging                 21.3               pyhd3eb1b0_0    defaults
pandas                    1.4.4            py38he9d5cce_0    defaults
pandocfilters             1.5.0              pyhd3eb1b0_0    defaults
panel                     0.13.1           py38hecd8cb5_0    defaults
param                     1.12.0             pyhd3eb1b0_0    defaults
parsel                    1.6.0            py38hecd8cb5_0    defaults
parso                     0.8.3              pyhd3eb1b0_0    defaults
partd                     1.2.0              pyhd3eb1b0_1    defaults
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zict                      2.1.0            py38hecd8cb5_0    defaults
zipp                      3.8.0            py38hecd8cb5_0    defaults
zlib                      1.2.12               h4dc903c_3    defaults
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zope.interface            5.4.0            py38h9ed2024_0    defaults
zstd                      1.5.2                hcb37349_0    defaults

Additional Context

No response

vid-akella commented 2 years ago

Was able to figure out why my update didn't go through and was able to correctly update navigator. Request to close this as it was reported in error.

anas0001 commented 5 months ago

Hi @vid-akella, I have the same issue, can you share how you managed to fix it?