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Rstudio server doesn't like conda's R on CentOS7 #8654

Open kalefranz opened 6 years ago

kalefranz commented 6 years ago

From @dturaev on February 23, 2018 16:27

Hi, I'm running a virtualbox with CentOS7. Rstudio server runs nicely with yum-installed R. However, when the R version is switched to conda's R, there's a problem.

[root@node ~]# rstudio-server verify-installation
/usr/lib/rstudio-server/bin/rsession: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /apps/anaconda2/lib/R/lib/../../libicuuc.so.58)
/usr/lib/rstudio-server/bin/rsession: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /apps/anaconda2/lib/R/lib/../../libicuuc.so.58)
/usr/lib/rstudio-server/bin/rsession: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /apps/anaconda2/lib/R/lib/../../libicui18n.so.58)
/usr/lib/rstudio-server/bin/rsession: /lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /apps/anaconda2/lib/R/lib/../../libicui18n.so.58)

and when the server is contacted through the browser, an error box says "Unable to connect to service". Apparently conda's R can't see the newer libstdc++ version that comes with anaconda?

[root@node ~]# ll /lib64/libstdc++.so.6*
lrwxrwxrwx. 1 root root     19 22. Feb 16:55 /lib64/libstdc++.so.6 -> libstdc++.so.6.0.19
-rwxr-xr-x. 1 root root 995840 30. Nov 17:35 /lib64/libstdc++.so.6.0.19

Copied from original issue: conda/conda#6927

kalefranz commented 6 years ago

From @mingwandroid on February 23, 2018 16:37

conda install rstudio please.

kalefranz commented 6 years ago

From @dturaev on February 23, 2018 16:44

Done, but same problem as before.

kalefranz commented 6 years ago

From @dturaev on February 23, 2018 17:4

The issue is pretty much open for me, and I don't think the problem is that obvious, but well...

mingwandroid commented 6 years ago

@dturaev you didn't provide the info that the template asked you for in this bug report.

We need to see conda info and conda list --show-channel-urls.

FWIW, I frequently run Anaconda's R and Anaconda's RStudio together on CentOS 7 (and on various Ubuntu releases and ArchLinux).

mingwandroid commented 6 years ago

Rstudio server runs nicely with yum-installed R

Given this information I suspect you have conflicting locally-built R packages in ~/R/library. Please move them out of the way and try again.

dturaev commented 6 years ago

I switched to Anaconda3, no change. I also shouldn't have any locally-built R packages... Also, problem remained after yum remove R R-devel R-core R-core-devel. Sorry, my bad, here it is:

(base) [root@node apps]# conda info

     active environment : base
    active env location : /apps/anaconda3
            shell level : 1
       user config file : /root/.condarc
 populated config files : /root/.condarc
          conda version : 4.4.10
    conda-build version : 3.4.1
         python version : 3.6.4.final.0
       base environment : /apps/anaconda3  (writable)
           channel URLs : https://conda.anaconda.org/r/linux-64
                          https://conda.anaconda.org/r/noarch
                          https://repo.continuum.io/pkgs/main/linux-64
                          https://repo.continuum.io/pkgs/main/noarch
                          https://repo.continuum.io/pkgs/free/linux-64
                          https://repo.continuum.io/pkgs/free/noarch
                          https://repo.continuum.io/pkgs/r/linux-64
                          https://repo.continuum.io/pkgs/r/noarch
                          https://repo.continuum.io/pkgs/pro/linux-64
                          https://repo.continuum.io/pkgs/pro/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /apps/anaconda3/pkgs
                          /root/.conda/pkgs
       envs directories : /apps/anaconda3/envs
                          /root/.conda/envs
               platform : linux-64
             user-agent : conda/4.4.10 requests/2.18.4 CPython/3.6.4 Linux/3.10.0-693.17.1.el7.x86_64 centos/7 glibc/2.17
                UID:GID : 0:0
             netrc file : None
           offline mode : False

(base) [root@node apps]# conda  list --show-channel-urls
# packages in environment at /apps/anaconda3:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0            py36he11e457_0    defaults
_r-mutex                  1.0.0               anacondar_1    r
alabaster                 0.7.10           py36h306e16b_0    defaults
anaconda                  5.1.0                    py36_2    defaults
anaconda-client           1.6.9                    py36_0    defaults
anaconda-navigator        1.7.0                    py36_0    defaults
anaconda-project          0.8.2            py36h44fb852_0    defaults
asn1crypto                0.24.0                   py36_0    defaults
astroid                   1.6.1                    py36_0    defaults
astropy                   2.0.3            py36h14c3975_0    defaults
attrs                     17.4.0                   py36_0    defaults
babel                     2.5.3                    py36_0    defaults
backports                 1.0              py36hfa02d7e_1    defaults
backports.shutil_get_terminal_size 1.0.0            py36hfea85ff_2    defaults
beautifulsoup4            4.6.0            py36h49b8c8c_1    defaults
bitarray                  0.8.1            py36h14c3975_1    defaults
bkcharts                  0.2              py36h735825a_0    defaults
blaze                     0.11.3           py36h4e06776_0    defaults
bleach                    2.1.2                    py36_0    defaults
bokeh                     0.12.13          py36h2f9c1c0_0    defaults
boto                      2.48.0           py36h6e4cd66_1    defaults
bottleneck                1.2.1            py36haac1ea0_0    defaults
bzip2                     1.0.6                h9a117a8_4    defaults
ca-certificates           2017.08.26           h1d4fec5_0    defaults
cairo                     1.14.12              h77bcde2_0    defaults
certifi                   2018.1.18                py36_0    defaults
cffi                      1.11.4           py36h9745a5d_0    defaults
chardet                   3.0.4            py36h0f667ec_1    defaults
click                     6.7              py36h5253387_0    defaults
cloudpickle               0.5.2                    py36_1    defaults
clyent                    1.2.2            py36h7e57e65_1    defaults
colorama                  0.3.9            py36h489cec4_0    defaults
conda                     4.4.10                   py36_0    defaults
conda-build               3.4.1                    py36_0    defaults
conda-env                 2.6.0                h36134e3_1    defaults
conda-verify              2.0.0            py36h98955d8_0    defaults
contextlib2               0.5.5            py36h6c84a62_0    defaults
cryptography              2.1.4            py36hd09be54_0    defaults
curl                      7.58.0               h84994c4_0    defaults
cycler                    0.10.0           py36h93f1223_0    defaults
cyrus-sasl                2.1.26               h1dd3434_1    defaults
cython                    0.27.3           py36h1860423_0    defaults
cytoolz                   0.9.0            py36h14c3975_0    defaults
dask                      0.16.1                   py36_0    defaults
dask-core                 0.16.1                   py36_0    defaults
datashape                 0.5.4            py36h3ad6b5c_0    defaults
dbus                      1.12.2               hc3f9b76_1    defaults
decorator                 4.2.1                    py36_0    defaults
distributed               1.20.2                   py36_0    defaults
docutils                  0.14             py36hb0f60f5_0    defaults
entrypoints               0.2.3            py36h1aec115_2    defaults
et_xmlfile                1.0.1            py36hd6bccc3_0    defaults
expat                     2.2.5                he0dffb1_0    defaults
fastcache                 1.0.2            py36h14c3975_2    defaults
filelock                  2.0.13           py36h646ffb5_0    defaults
flask                     0.12.2           py36hb24657c_0    defaults
flask-cors                3.0.3            py36h2d857d3_0    defaults
font-ttf-dejavu-sans-mono 2.37                 h6964260_0    defaults
font-ttf-inconsolata      2.001                hcb22688_0    defaults
font-ttf-source-code-pro  2.030                h7457263_0    defaults
font-ttf-ubuntu           0.83                 h8b1ccd4_0    defaults
fontconfig                2.12.4               h88586e7_1    defaults
fonts-anaconda            1                    h8fa9717_0    defaults
freetype                  2.8                  hab7d2ae_1    defaults
get_terminal_size         1.0.0                haa9412d_0    defaults
gevent                    1.2.2            py36h2fe25dc_0    defaults
glib                      2.53.6               h5d9569c_2    defaults
glob2                     0.6              py36he249c77_0    defaults
gmp                       6.1.2                h6c8ec71_1    defaults
gmpy2                     2.0.8            py36hc8893dd_2    defaults
graphite2                 1.3.10               hf63cedd_1    defaults
greenlet                  0.4.12           py36h2d503a6_0    defaults
gsl                       2.2.1                h0c605f7_3    defaults
gst-plugins-base          1.12.4               h33fb286_0    defaults
gstreamer                 1.12.4               hb53b477_0    defaults
h5py                      2.7.1            py36h3585f63_0    defaults
harfbuzz                  1.7.4                hc5b324e_0    defaults
hdf5                      1.10.1               h9caa474_1    defaults
heapdict                  1.0.0                    py36_2    defaults
html5lib                  1.0.1            py36h2f9c1c0_0    defaults
icu                       58.2                 h9c2bf20_1    defaults
idna                      2.6              py36h82fb2a8_1    defaults
imageio                   2.2.0            py36he555465_0    defaults
imagesize                 0.7.1            py36h52d8127_0    defaults
intel-openmp              2018.0.0             hc7b2577_8    defaults
ipykernel                 4.8.0                    py36_0    defaults
ipython                   6.2.1            py36h88c514a_1    defaults
ipython_genutils          0.2.0            py36hb52b0d5_0    defaults
ipywidgets                7.1.1                    py36_0    defaults
isort                     4.2.15           py36had401c0_0    defaults
itsdangerous              0.24             py36h93cc618_1    defaults
jbig                      2.1                  hdba287a_0    defaults
jdcal                     1.3              py36h4c697fb_0    defaults
jedi                      0.11.1                   py36_0    defaults
jinja2                    2.10             py36ha16c418_0    defaults
jpeg                      9b                   h024ee3a_2    defaults
jsonschema                2.6.0            py36h006f8b5_0    defaults
jupyter                   1.0.0                    py36_4    defaults
jupyter_client            5.2.2                    py36_0    defaults
jupyter_console           5.2.0            py36he59e554_1    defaults
jupyter_core              4.4.0            py36h7c827e3_0    defaults
jupyterlab                0.31.5                   py36_0    defaults
jupyterlab_launcher       0.10.2                   py36_0    defaults
krb5                      1.14.2               hcdc1b81_6    defaults
lazy-object-proxy         1.3.1            py36h10fcdad_0    defaults
libcurl                   7.58.0               h1ad7b7a_0    defaults
libedit                   3.1                  heed3624_0    defaults
libffi                    3.2.1                hd88cf55_4    defaults
libgcc-ng                 7.2.0                h7cc24e2_2    defaults
libgfortran-ng            7.2.0                h9f7466a_2    defaults
libntlm                   1.4                  h14c3975_2    defaults
libpng                    1.6.34               hb9fc6fc_0    defaults
libsodium                 1.0.15               hf101ebd_0    defaults
libssh2                   1.8.0                h9cfc8f7_4    defaults
libstdcxx-ng              7.2.0                h7a57d05_2    defaults
libtiff                   4.0.9                h28f6b97_0    defaults
libtool                   2.4.6                h544aabb_3    defaults
libuuid                   1.0.3                h1bed415_2    defaults
libxcb                    1.12                 hcd93eb1_4    defaults
libxml2                   2.9.7                h26e45fe_0    defaults
libxslt                   1.1.32               h1312cb7_0    defaults
llvmlite                  0.21.0           py36ha241eea_0    defaults
locket                    0.2.0            py36h787c0ad_1    defaults
lxml                      4.1.1            py36hf71bdeb_1    defaults
lzo                       2.10                 h49e0be7_2    defaults
markupsafe                1.0              py36hd9260cd_1    defaults
matplotlib                2.1.2            py36h0e671d2_0    defaults
mccabe                    0.6.1            py36h5ad9710_1    defaults
mistune                   0.8.3                    py36_0    defaults
mkl                       2018.0.1             h19d6760_4    defaults
mkl-service               1.1.2            py36h17a0993_4    defaults
mpc                       1.0.3                hec55b23_5    defaults
mpfr                      3.1.5                h11a74b3_2    defaults
mpmath                    1.0.0            py36hfeacd6b_2    defaults
msgpack-python            0.5.1            py36h6bb024c_0    defaults
multipledispatch          0.4.9            py36h41da3fb_0    defaults
navigator-updater         0.1.0            py36h14770f7_0    defaults
nbconvert                 5.3.1            py36hb41ffb7_0    defaults
nbformat                  4.4.0            py36h31c9010_0    defaults
ncurses                   6.0                  h9df7e31_2    defaults
networkx                  2.1                      py36_0    defaults
nltk                      3.2.5            py36h7532b22_0    defaults
nose                      1.3.7            py36hcdf7029_2    defaults
notebook                  5.4.0                    py36_0    defaults
numba                     0.36.2          np114py36hc6662d5_0    defaults
numexpr                   2.6.4            py36hc4a3f9a_0    defaults
numpy                     1.14.0           py36h3dfced4_1    defaults
numpydoc                  0.7.0            py36h18f165f_0    defaults
odo                       0.5.1            py36h90ed295_0    defaults
olefile                   0.45.1                   py36_0    defaults
openpyxl                  2.4.10                   py36_0    defaults
openssl                   1.0.2n               hb7f436b_0    defaults
packaging                 16.8             py36ha668100_1    defaults
pandas                    0.22.0           py36hf484d3e_0    defaults
pandoc                    1.19.2.1             hea2e7c5_1    defaults
pandocfilters             1.4.2            py36ha6701b7_1    defaults
pango                     1.41.0               hd475d92_0    defaults
parso                     0.1.1            py36h35f843b_0    defaults
partd                     0.3.8            py36h36fd896_0    defaults
patchelf                  0.9                  hf79760b_2    defaults
path.py                   10.5             py36h55ceabb_0    defaults
pathlib2                  2.3.0            py36h49efa8e_0    defaults
patsy                     0.5.0                    py36_0    defaults
pcre                      8.41                 hc27e229_1    defaults
pep8                      1.7.1                    py36_0    defaults
pexpect                   4.3.1                    py36_0    defaults
pickleshare               0.7.4            py36h63277f8_0    defaults
pillow                    5.0.0            py36h3deb7b8_0    defaults
pip                       9.0.1            py36h6c6f9ce_4    defaults
pixman                    0.34.0               hceecf20_3    defaults
pkginfo                   1.4.1            py36h215d178_1    defaults
pluggy                    0.6.0            py36hb689045_0    defaults
ply                       3.10             py36hed35086_0    defaults
prompt_toolkit            1.0.15           py36h17d85b1_0    defaults
psutil                    5.4.3            py36h14c3975_0    defaults
ptyprocess                0.5.2            py36h69acd42_0    defaults
py                        1.5.2            py36h29bf505_0    defaults
pycodestyle               2.3.1            py36hf609f19_0    defaults
pycosat                   0.6.3            py36h0a5515d_0    defaults
pycparser                 2.18             py36hf9f622e_1    defaults
pycrypto                  2.6.1            py36h14c3975_7    defaults
pycurl                    7.43.0.1         py36hb7f436b_0    defaults
pyflakes                  1.6.0            py36h7bd6a15_0    defaults
pygments                  2.2.0            py36h0d3125c_0    defaults
pylint                    1.8.2                    py36_0    defaults
pyodbc                    4.0.22           py36hf484d3e_0    defaults
pyopenssl                 17.5.0           py36h20ba746_0    defaults
pyparsing                 2.2.0            py36hee85983_1    defaults
pyqt                      5.6.0            py36h0386399_5    defaults
pysocks                   1.6.7            py36hd97a5b1_1    defaults
pytables                  3.4.2            py36h3b5282a_2    defaults
pytest                    3.3.2                    py36_0    defaults
python                    3.6.4                hc3d631a_1    defaults
python-dateutil           2.6.1            py36h88d3b88_1    defaults
pytz                      2017.3           py36h63b9c63_0    defaults
pywavelets                0.5.2            py36he602eb0_0    defaults
pyyaml                    3.12             py36hafb9ca4_1    defaults
pyzmq                     16.0.3           py36he2533c7_0    defaults
qt                        5.6.2               h974d657_12    defaults
qtawesome                 0.4.4            py36h609ed8c_0    defaults
qtconsole                 4.3.1            py36h8f73b5b_0    defaults
qtpy                      1.3.1            py36h3691cc8_0    defaults
r-assertthat              0.2.0            r342h06193eb_0    r
r-backports               1.1.1            r342h9a9f1f2_0    r
r-base                    3.4.2                haf99962_0    r
r-base64enc               0.1_3            r342h7c929ec_4    r
r-bh                      1.65.0_1         r342h2d7c2ce_0    r
r-bindr                   0.1              r342hdee8079_0    r
r-bindrcpp                0.2              r342h4ea5b31_0    r
r-bit                     1.1_12           r342h7a05cba_0    r
r-bit64                   0.9_7            r342hcc44603_0    r
r-bitops                  1.0_6            r342hd891396_4    r
r-blob                    1.1.0            r342hf606c5c_0    r
r-boot                    1.3_20           r342ha5ac741_0    r
r-broom                   0.4.2            r342h90c284a_0    r
r-caret                   6.0_77           r342h201f268_0    r
r-catools                 1.17.1           r342hf01772b_4    r
r-cellranger              1.1.0            r342h51baf57_0    r
r-class                   7.3_14           r342h4797347_4    r
r-cluster                 2.0.6            r342hcb72a25_0    r
r-codetools               0.2_15           r342hc9ffb9b_0    r
r-colorspace              1.3_2            r342h81b277d_0    r
r-config                  0.2              r342hcf13b6a_0    r
r-crayon                  1.3.4            r342h0ed458a_0    r
r-curl                    3.0              r342hba591e3_0    r
r-cvst                    0.2_1            r342h830f301_0    r
r-data.table              1.10.4_1         r342h3908b10_0    r
r-dbi                     0.7              r342h835dbd3_0    r
r-dbplyr                  1.1.0            r342h3750f00_0    r
r-ddalpha                 1.3.1            r342hd2d3f94_0    r
r-deoptimr                1.0_8            r342h996e1ad_0    r
r-dichromat               2.0_0            r342h341c752_4    r
r-digest                  0.6.12           r342hee14287_0    r
r-dimred                  0.1.0            r342hb158d3e_0    r
r-dplyr                   0.7.4            r342hee63e26_0    r
r-drr                     0.0.2            r342h0fe108c_0    r
r-essentials              1.7.0            r342hf65ed6a_0    r
r-evaluate                0.10.1           r342hb679cc2_0    r
r-forcats                 0.2.0            r342h5fcb364_0    r
r-foreach                 1.4.3            r342h49221b0_4    r
r-foreign                 0.8_69           r342hbd6b6bb_0    r
r-formatr                 1.5              r342h0e06a18_0    r
r-ggplot2                 2.2.1            r342h8b6cf70_0    r
r-gistr                   0.4.0            r342h5cd5773_0    r
r-glmnet                  2.0_13           r342h0aac7f1_0    r
r-glue                    1.1.1            r342h3154e12_0    r
r-gower                   0.1.2            r342h54e18f5_0    r
r-gtable                  0.2.0            r342h8e3b2c8_0    r
r-haven                   1.1.0            r342h8909e7d_0    r
r-hexbin                  1.27.1           r342h72fd8d9_4    r
r-highr                   0.6              r342h2351100_0    r
r-hms                     0.3              r342ha729a9b_0    r
r-htmltools               0.3.6            r342h4080c21_0    r
r-htmlwidgets             0.9              r342h7fcc9b6_0    r
r-httpuv                  1.3.5            r342ha5ddd88_0    r
r-httr                    1.3.1            r342h7aba7de_0    r
r-ipred                   0.9_6            r342h7d58d5b_0    r
r-irdisplay               0.4.4            r342hc31a1b2_0    r
r-irkernel                0.8.9            r342hfe3cb8f_0    r
r-iterators               1.0.8            r342h4caec00_4    r
r-jsonlite                1.5              r342hf92f79e_0    r
r-kernlab                 0.9_25           r342hd770e69_0    r
r-kernsmooth              2.23_15          r342hdc3efa4_4    r
r-knitr                   1.17             r342h6500ef9_0    r
r-labeling                0.3              r342h7c30189_4    r
r-lattice                 0.20_35          r342h0f762c2_0    r
r-lava                    1.5.1            r342h598eca9_0    r
r-lazyeval                0.2.0            r342h346dbdc_0    r
r-lubridate               1.6.0            r342h47739ec_0    r
r-magrittr                1.5              r342h895a831_4    r
r-maps                    3.2.0            r342h79c810f_0    r
r-markdown                0.8              r342h4cc6e3e_0    r
r-mass                    7.3_47           r342hd8605c9_0    r
r-matrix                  1.2_11           r342h3a55fe1_0    r
r-mgcv                    1.8_22           r342h176cc83_0    r
r-mime                    0.5              r342h01856a9_0    r
r-miniui                  0.1.1            r342h33c7739_0    r
r-mnormt                  1.5_5            r342he1a489d_0    r
r-modelmetrics            1.1.0            r342h5a23eb1_0    r
r-modelr                  0.1.1            r342heb933ea_0    r
r-mongolite               1.2              r342hdcf03d2_0    r
r-munsell                 0.4.3            r342h79883fb_0    r
r-nlme                    3.1_131          r342h7f704e8_0    r
r-nnet                    7.3_12           r342ha98c111_0    r
r-numderiv                2016.8_1         r342h12eb246_0    r
r-odbc                    1.1.2            r342hf7c7794_0    r
r-openssl                 0.9.7            r342h1e3c16d_0    r
r-packrat                 0.4.8_1          r342h7bab2f7_0    r
r-pbdzmq                  0.2_6            r342h934a24f_0    r
r-pkgconfig               2.0.1            r342h5d9b92e_0    r
r-pki                     0.1_5.1          r342hba91d42_0    r
r-plogr                   0.1_1            r342h6d7f4c2_0    r
r-plyr                    1.8.4            r342h876901b_0    r
r-prodlim                 1.6.1            r342hd95c883_0    r
r-profvis                 0.3.3            r342h36dbb6c_0    r
r-pryr                    0.1.2            r342hf3bf84b_0    r
r-psych                   1.7.8            r342h1e2dc86_0    r
r-purrr                   0.2.3            r342h7916a1c_0    r
r-quantmod                0.4_11           r342h9c9c021_0    r
r-r6                      2.2.2            r342hcc750b5_0    r
r-randomforest            4.6_12           r342h41e62a9_4    r
r-rappdirs                0.3.1            r342h03ed50e_0    r
r-rbokeh                  0.5.0            r342h257354a_0    r
r-rcolorbrewer            1.1_2            r342h0dda8fb_0    r
r-rcpp                    0.12.13          r342h9f83869_0    r
r-rcpproll                0.2.2            r342hdd0cc16_0    r
r-rcurl                   1.95_4.8         r342hecb3894_0    r
r-readr                   1.1.1            r342hb25467c_0    r
r-readxl                  1.0.0            r342h1e5739b_0    r
r-recipes                 0.1.0            r342h0924b81_0    r
r-recommended             3.4.2                h1751db4_0    r
r-rematch                 1.0.1            r342he3f91f1_0    r
r-repr                    0.12.0           r342hde08b23_0    r
r-reshape2                1.4.2            r342h2e254a0_0    r
r-rjava                   0.9_9            r342h9890981_0    r
r-rjdbc                   0.2_5            r342he0388cf_0    r
r-rjsonio                 1.3_0            r342h5685322_4    r
r-rlang                   0.1.2            r342hc878738_0    r
r-rmarkdown               1.6              r342hacd9e3e_2    r
r-robustbase              0.92_7           r342h6021a74_0    r
r-rpart                   4.1_11           r342hd35cc14_0    r
r-rprojroot               1.2              r342hd69aa9e_0    r
r-rsconnect               0.8.5            r342h3a8d77b_0    r
r-rstudioapi              0.7              r342hedff9e9_0    r
r-rvest                   0.3.2            r342h8e81af5_0    r
r-scales                  0.5.0            r342h876bdd3_0    r
r-selectr                 0.3_1            r342hd6c1ff9_0    r
r-sfsmisc                 1.1_1            r342hadb04b4_0    r
r-shiny                   1.0.5            r342hc0a01ce_0    r
r-sourcetools             0.1.6            r342h519fec0_0    r
r-sparklyr                0.6.3            r342hac80a45_0    r
r-spatial                 7.3_11           r342hff2a1d0_4    r
r-stringi                 1.1.6            r342hf484d3e_0    r
r-stringr                 1.2.0            r342h701d218_0    r
r-survival                2.41_3           r342hac888f2_0    r
r-tibble                  1.3.4            r342h041fa31_0    r
r-tidyr                   0.7.1            r342h1bc61e7_0    r
r-tidyselect              0.2.2            r342h04f720c_0    r
r-tidyverse               1.1.1            r342hf9e2102_0    r
r-timedate                3012.100         r342h48d2e88_4    r
r-ttr                     0.23_2           r342hf82c04a_0    r
r-uuid                    0.1_2            r342h1393287_4    r
r-viridislite             0.2.0            r342h3706391_0    r
r-withr                   2.0.0            r342hfa1897f_0    r
r-xml2                    1.1.1            r342h3ff9a91_0    r
r-xtable                  1.8_2            r342hb75f6e7_0    r
r-xts                     0.10_0           r342h17852d6_4    r
r-yaml                    2.1.14           r342h72d8650_0    r
r-zoo                     1.8_0            r342h9faeba2_0    r
readline                  7.0                  ha6073c6_4    defaults
requests                  2.18.4           py36he2e5f8d_1    defaults
rope                      0.10.7           py36h147e2ec_0    defaults
rstudio                   1.1.383              h2c9cdda_2    r
ruamel_yaml               0.15.35          py36h14c3975_1    defaults
scikit-image              0.13.1           py36h14c3975_1    defaults
scikit-learn              0.19.1           py36h7aa7ec6_0    defaults
scipy                     1.0.0            py36hbf646e7_0    defaults
seaborn                   0.8.1            py36hfad7ec4_0    defaults
send2trash                1.4.2                    py36_0    defaults
setuptools                38.4.0                   py36_0    defaults
simplegeneric             0.8.1                    py36_2    defaults
singledispatch            3.4.0.3          py36h7a266c3_0    defaults
sip                       4.18.1           py36h51ed4ed_2    defaults
six                       1.11.0           py36h372c433_1    defaults
snowballstemmer           1.2.1            py36h6febd40_0    defaults
sortedcollections         0.5.3            py36h3c761f9_0    defaults
sortedcontainers          1.5.9                    py36_0    defaults
sphinx                    1.6.6                    py36_0    defaults
sphinxcontrib             1.0              py36h6d0f590_1    defaults
sphinxcontrib-websupport  1.0.1            py36hb5cb234_1    defaults
spyder                    3.2.6                    py36_0    defaults
sqlalchemy                1.2.1            py36h14c3975_0    defaults
sqlite                    3.22.0               h1bed415_0    defaults
statsmodels               0.8.0            py36h8533d0b_0    defaults
sympy                     1.1.1            py36hc6d1c1c_0    defaults
tblib                     1.3.2            py36h34cf8b6_0    defaults
terminado                 0.8.1                    py36_1    defaults
testpath                  0.3.1            py36h8cadb63_0    defaults
tk                        8.6.7                hc745277_3    defaults
toolz                     0.9.0                    py36_0    defaults
tornado                   4.5.3                    py36_0    defaults
traitlets                 4.3.2            py36h674d592_0    defaults
typing                    3.6.2            py36h7da032a_0    defaults
unicodecsv                0.14.1           py36ha668878_0    defaults
unixodbc                  2.3.4                hc36303a_1    defaults
urllib3                   1.22             py36hbe7ace6_0    defaults
wcwidth                   0.1.7            py36hdf4376a_0    defaults
webencodings              0.5.1            py36h800622e_1    defaults
werkzeug                  0.14.1                   py36_0    defaults
wheel                     0.30.0           py36hfd4bba0_1    defaults
widgetsnbextension        3.1.0                    py36_0    defaults
wrapt                     1.10.11          py36h28b7045_0    defaults
xlrd                      1.1.0            py36h1db9f0c_1    defaults
xlsxwriter                1.0.2            py36h3de1aca_0    defaults
xlwt                      1.3.0            py36h7b00a1f_0    defaults
xz                        5.2.3                h55aa19d_2    defaults
yaml                      0.1.7                had09818_2    defaults
zeromq                    4.2.2                hbedb6e5_2    defaults
zict                      0.1.3            py36h3a3bf81_0    defaults
zlib                      1.2.11               ha838bed_2    defaults

Thanks for your help.

prasanna-sk commented 4 years ago

I switched to Anaconda3, no change. I also shouldn't have any locally-built R packages... Also, problem remained after yum remove R R-devel R-core R-core-devel. Sorry, my bad, here it is:

(base) [root@node apps]# conda info

     active environment : base
    active env location : /apps/anaconda3
            shell level : 1
       user config file : /root/.condarc
 populated config files : /root/.condarc
          conda version : 4.4.10
    conda-build version : 3.4.1
         python version : 3.6.4.final.0
       base environment : /apps/anaconda3  (writable)
           channel URLs : https://conda.anaconda.org/r/linux-64
                          https://conda.anaconda.org/r/noarch
                          https://repo.continuum.io/pkgs/main/linux-64
                          https://repo.continuum.io/pkgs/main/noarch
                          https://repo.continuum.io/pkgs/free/linux-64
                          https://repo.continuum.io/pkgs/free/noarch
                          https://repo.continuum.io/pkgs/r/linux-64
                          https://repo.continuum.io/pkgs/r/noarch
                          https://repo.continuum.io/pkgs/pro/linux-64
                          https://repo.continuum.io/pkgs/pro/noarch
                          https://conda.anaconda.org/bioconda/linux-64
                          https://conda.anaconda.org/bioconda/noarch
                          https://conda.anaconda.org/conda-forge/linux-64
                          https://conda.anaconda.org/conda-forge/noarch
          package cache : /apps/anaconda3/pkgs
                          /root/.conda/pkgs
       envs directories : /apps/anaconda3/envs
                          /root/.conda/envs
               platform : linux-64
             user-agent : conda/4.4.10 requests/2.18.4 CPython/3.6.4 Linux/3.10.0-693.17.1.el7.x86_64 centos/7 glibc/2.17
                UID:GID : 0:0
             netrc file : None
           offline mode : False

(base) [root@node apps]# conda  list --show-channel-urls
# packages in environment at /apps/anaconda3:
#
# Name                    Version                   Build  Channel
_ipyw_jlab_nb_ext_conf    0.1.0            py36he11e457_0    defaults
_r-mutex                  1.0.0               anacondar_1    r
alabaster                 0.7.10           py36h306e16b_0    defaults
anaconda                  5.1.0                    py36_2    defaults
anaconda-client           1.6.9                    py36_0    defaults
anaconda-navigator        1.7.0                    py36_0    defaults
anaconda-project          0.8.2            py36h44fb852_0    defaults
asn1crypto                0.24.0                   py36_0    defaults
astroid                   1.6.1                    py36_0    defaults
astropy                   2.0.3            py36h14c3975_0    defaults
attrs                     17.4.0                   py36_0    defaults
babel                     2.5.3                    py36_0    defaults
backports                 1.0              py36hfa02d7e_1    defaults
backports.shutil_get_terminal_size 1.0.0            py36hfea85ff_2    defaults
beautifulsoup4            4.6.0            py36h49b8c8c_1    defaults
bitarray                  0.8.1            py36h14c3975_1    defaults
bkcharts                  0.2              py36h735825a_0    defaults
blaze                     0.11.3           py36h4e06776_0    defaults
bleach                    2.1.2                    py36_0    defaults
bokeh                     0.12.13          py36h2f9c1c0_0    defaults
boto                      2.48.0           py36h6e4cd66_1    defaults
bottleneck                1.2.1            py36haac1ea0_0    defaults
bzip2                     1.0.6                h9a117a8_4    defaults
ca-certificates           2017.08.26           h1d4fec5_0    defaults
cairo                     1.14.12              h77bcde2_0    defaults
certifi                   2018.1.18                py36_0    defaults
cffi                      1.11.4           py36h9745a5d_0    defaults
chardet                   3.0.4            py36h0f667ec_1    defaults
click                     6.7              py36h5253387_0    defaults
cloudpickle               0.5.2                    py36_1    defaults
clyent                    1.2.2            py36h7e57e65_1    defaults
colorama                  0.3.9            py36h489cec4_0    defaults
conda                     4.4.10                   py36_0    defaults
conda-build               3.4.1                    py36_0    defaults
conda-env                 2.6.0                h36134e3_1    defaults
conda-verify              2.0.0            py36h98955d8_0    defaults
contextlib2               0.5.5            py36h6c84a62_0    defaults
cryptography              2.1.4            py36hd09be54_0    defaults
curl                      7.58.0               h84994c4_0    defaults
cycler                    0.10.0           py36h93f1223_0    defaults
cyrus-sasl                2.1.26               h1dd3434_1    defaults
cython                    0.27.3           py36h1860423_0    defaults
cytoolz                   0.9.0            py36h14c3975_0    defaults
dask                      0.16.1                   py36_0    defaults
dask-core                 0.16.1                   py36_0    defaults
datashape                 0.5.4            py36h3ad6b5c_0    defaults
dbus                      1.12.2               hc3f9b76_1    defaults
decorator                 4.2.1                    py36_0    defaults
distributed               1.20.2                   py36_0    defaults
docutils                  0.14             py36hb0f60f5_0    defaults
entrypoints               0.2.3            py36h1aec115_2    defaults
et_xmlfile                1.0.1            py36hd6bccc3_0    defaults
expat                     2.2.5                he0dffb1_0    defaults
fastcache                 1.0.2            py36h14c3975_2    defaults
filelock                  2.0.13           py36h646ffb5_0    defaults
flask                     0.12.2           py36hb24657c_0    defaults
flask-cors                3.0.3            py36h2d857d3_0    defaults
font-ttf-dejavu-sans-mono 2.37                 h6964260_0    defaults
font-ttf-inconsolata      2.001                hcb22688_0    defaults
font-ttf-source-code-pro  2.030                h7457263_0    defaults
font-ttf-ubuntu           0.83                 h8b1ccd4_0    defaults
fontconfig                2.12.4               h88586e7_1    defaults
fonts-anaconda            1                    h8fa9717_0    defaults
freetype                  2.8                  hab7d2ae_1    defaults
get_terminal_size         1.0.0                haa9412d_0    defaults
gevent                    1.2.2            py36h2fe25dc_0    defaults
glib                      2.53.6               h5d9569c_2    defaults
glob2                     0.6              py36he249c77_0    defaults
gmp                       6.1.2                h6c8ec71_1    defaults
gmpy2                     2.0.8            py36hc8893dd_2    defaults
graphite2                 1.3.10               hf63cedd_1    defaults
greenlet                  0.4.12           py36h2d503a6_0    defaults
gsl                       2.2.1                h0c605f7_3    defaults
gst-plugins-base          1.12.4               h33fb286_0    defaults
gstreamer                 1.12.4               hb53b477_0    defaults
h5py                      2.7.1            py36h3585f63_0    defaults
harfbuzz                  1.7.4                hc5b324e_0    defaults
hdf5                      1.10.1               h9caa474_1    defaults
heapdict                  1.0.0                    py36_2    defaults
html5lib                  1.0.1            py36h2f9c1c0_0    defaults
icu                       58.2                 h9c2bf20_1    defaults
idna                      2.6              py36h82fb2a8_1    defaults
imageio                   2.2.0            py36he555465_0    defaults
imagesize                 0.7.1            py36h52d8127_0    defaults
intel-openmp              2018.0.0             hc7b2577_8    defaults
ipykernel                 4.8.0                    py36_0    defaults
ipython                   6.2.1            py36h88c514a_1    defaults
ipython_genutils          0.2.0            py36hb52b0d5_0    defaults
ipywidgets                7.1.1                    py36_0    defaults
isort                     4.2.15           py36had401c0_0    defaults
itsdangerous              0.24             py36h93cc618_1    defaults
jbig                      2.1                  hdba287a_0    defaults
jdcal                     1.3              py36h4c697fb_0    defaults
jedi                      0.11.1                   py36_0    defaults
jinja2                    2.10             py36ha16c418_0    defaults
jpeg                      9b                   h024ee3a_2    defaults
jsonschema                2.6.0            py36h006f8b5_0    defaults
jupyter                   1.0.0                    py36_4    defaults
jupyter_client            5.2.2                    py36_0    defaults
jupyter_console           5.2.0            py36he59e554_1    defaults
jupyter_core              4.4.0            py36h7c827e3_0    defaults
jupyterlab                0.31.5                   py36_0    defaults
jupyterlab_launcher       0.10.2                   py36_0    defaults
krb5                      1.14.2               hcdc1b81_6    defaults
lazy-object-proxy         1.3.1            py36h10fcdad_0    defaults
libcurl                   7.58.0               h1ad7b7a_0    defaults
libedit                   3.1                  heed3624_0    defaults
libffi                    3.2.1                hd88cf55_4    defaults
libgcc-ng                 7.2.0                h7cc24e2_2    defaults
libgfortran-ng            7.2.0                h9f7466a_2    defaults
libntlm                   1.4                  h14c3975_2    defaults
libpng                    1.6.34               hb9fc6fc_0    defaults
libsodium                 1.0.15               hf101ebd_0    defaults
libssh2                   1.8.0                h9cfc8f7_4    defaults
libstdcxx-ng              7.2.0                h7a57d05_2    defaults
libtiff                   4.0.9                h28f6b97_0    defaults
libtool                   2.4.6                h544aabb_3    defaults
libuuid                   1.0.3                h1bed415_2    defaults
libxcb                    1.12                 hcd93eb1_4    defaults
libxml2                   2.9.7                h26e45fe_0    defaults
libxslt                   1.1.32               h1312cb7_0    defaults
llvmlite                  0.21.0           py36ha241eea_0    defaults
locket                    0.2.0            py36h787c0ad_1    defaults
lxml                      4.1.1            py36hf71bdeb_1    defaults
lzo                       2.10                 h49e0be7_2    defaults
markupsafe                1.0              py36hd9260cd_1    defaults
matplotlib                2.1.2            py36h0e671d2_0    defaults
mccabe                    0.6.1            py36h5ad9710_1    defaults
mistune                   0.8.3                    py36_0    defaults
mkl                       2018.0.1             h19d6760_4    defaults
mkl-service               1.1.2            py36h17a0993_4    defaults
mpc                       1.0.3                hec55b23_5    defaults
mpfr                      3.1.5                h11a74b3_2    defaults
mpmath                    1.0.0            py36hfeacd6b_2    defaults
msgpack-python            0.5.1            py36h6bb024c_0    defaults
multipledispatch          0.4.9            py36h41da3fb_0    defaults
navigator-updater         0.1.0            py36h14770f7_0    defaults
nbconvert                 5.3.1            py36hb41ffb7_0    defaults
nbformat                  4.4.0            py36h31c9010_0    defaults
ncurses                   6.0                  h9df7e31_2    defaults
networkx                  2.1                      py36_0    defaults
nltk                      3.2.5            py36h7532b22_0    defaults
nose                      1.3.7            py36hcdf7029_2    defaults
notebook                  5.4.0                    py36_0    defaults
numba                     0.36.2          np114py36hc6662d5_0    defaults
numexpr                   2.6.4            py36hc4a3f9a_0    defaults
numpy                     1.14.0           py36h3dfced4_1    defaults
numpydoc                  0.7.0            py36h18f165f_0    defaults
odo                       0.5.1            py36h90ed295_0    defaults
olefile                   0.45.1                   py36_0    defaults
openpyxl                  2.4.10                   py36_0    defaults
openssl                   1.0.2n               hb7f436b_0    defaults
packaging                 16.8             py36ha668100_1    defaults
pandas                    0.22.0           py36hf484d3e_0    defaults
pandoc                    1.19.2.1             hea2e7c5_1    defaults
pandocfilters             1.4.2            py36ha6701b7_1    defaults
pango                     1.41.0               hd475d92_0    defaults
parso                     0.1.1            py36h35f843b_0    defaults
partd                     0.3.8            py36h36fd896_0    defaults
patchelf                  0.9                  hf79760b_2    defaults
path.py                   10.5             py36h55ceabb_0    defaults
pathlib2                  2.3.0            py36h49efa8e_0    defaults
patsy                     0.5.0                    py36_0    defaults
pcre                      8.41                 hc27e229_1    defaults
pep8                      1.7.1                    py36_0    defaults
pexpect                   4.3.1                    py36_0    defaults
pickleshare               0.7.4            py36h63277f8_0    defaults
pillow                    5.0.0            py36h3deb7b8_0    defaults
pip                       9.0.1            py36h6c6f9ce_4    defaults
pixman                    0.34.0               hceecf20_3    defaults
pkginfo                   1.4.1            py36h215d178_1    defaults
pluggy                    0.6.0            py36hb689045_0    defaults
ply                       3.10             py36hed35086_0    defaults
prompt_toolkit            1.0.15           py36h17d85b1_0    defaults
psutil                    5.4.3            py36h14c3975_0    defaults
ptyprocess                0.5.2            py36h69acd42_0    defaults
py                        1.5.2            py36h29bf505_0    defaults
pycodestyle               2.3.1            py36hf609f19_0    defaults
pycosat                   0.6.3            py36h0a5515d_0    defaults
pycparser                 2.18             py36hf9f622e_1    defaults
pycrypto                  2.6.1            py36h14c3975_7    defaults
pycurl                    7.43.0.1         py36hb7f436b_0    defaults
pyflakes                  1.6.0            py36h7bd6a15_0    defaults
pygments                  2.2.0            py36h0d3125c_0    defaults
pylint                    1.8.2                    py36_0    defaults
pyodbc                    4.0.22           py36hf484d3e_0    defaults
pyopenssl                 17.5.0           py36h20ba746_0    defaults
pyparsing                 2.2.0            py36hee85983_1    defaults
pyqt                      5.6.0            py36h0386399_5    defaults
pysocks                   1.6.7            py36hd97a5b1_1    defaults
pytables                  3.4.2            py36h3b5282a_2    defaults
pytest                    3.3.2                    py36_0    defaults
python                    3.6.4                hc3d631a_1    defaults
python-dateutil           2.6.1            py36h88d3b88_1    defaults
pytz                      2017.3           py36h63b9c63_0    defaults
pywavelets                0.5.2            py36he602eb0_0    defaults
pyyaml                    3.12             py36hafb9ca4_1    defaults
pyzmq                     16.0.3           py36he2533c7_0    defaults
qt                        5.6.2               h974d657_12    defaults
qtawesome                 0.4.4            py36h609ed8c_0    defaults
qtconsole                 4.3.1            py36h8f73b5b_0    defaults
qtpy                      1.3.1            py36h3691cc8_0    defaults
r-assertthat              0.2.0            r342h06193eb_0    r
r-backports               1.1.1            r342h9a9f1f2_0    r
r-base                    3.4.2                haf99962_0    r
r-base64enc               0.1_3            r342h7c929ec_4    r
r-bh                      1.65.0_1         r342h2d7c2ce_0    r
r-bindr                   0.1              r342hdee8079_0    r
r-bindrcpp                0.2              r342h4ea5b31_0    r
r-bit                     1.1_12           r342h7a05cba_0    r
r-bit64                   0.9_7            r342hcc44603_0    r
r-bitops                  1.0_6            r342hd891396_4    r
r-blob                    1.1.0            r342hf606c5c_0    r
r-boot                    1.3_20           r342ha5ac741_0    r
r-broom                   0.4.2            r342h90c284a_0    r
r-caret                   6.0_77           r342h201f268_0    r
r-catools                 1.17.1           r342hf01772b_4    r
r-cellranger              1.1.0            r342h51baf57_0    r
r-class                   7.3_14           r342h4797347_4    r
r-cluster                 2.0.6            r342hcb72a25_0    r
r-codetools               0.2_15           r342hc9ffb9b_0    r
r-colorspace              1.3_2            r342h81b277d_0    r
r-config                  0.2              r342hcf13b6a_0    r
r-crayon                  1.3.4            r342h0ed458a_0    r
r-curl                    3.0              r342hba591e3_0    r
r-cvst                    0.2_1            r342h830f301_0    r
r-data.table              1.10.4_1         r342h3908b10_0    r
r-dbi                     0.7              r342h835dbd3_0    r
r-dbplyr                  1.1.0            r342h3750f00_0    r
r-ddalpha                 1.3.1            r342hd2d3f94_0    r
r-deoptimr                1.0_8            r342h996e1ad_0    r
r-dichromat               2.0_0            r342h341c752_4    r
r-digest                  0.6.12           r342hee14287_0    r
r-dimred                  0.1.0            r342hb158d3e_0    r
r-dplyr                   0.7.4            r342hee63e26_0    r
r-drr                     0.0.2            r342h0fe108c_0    r
r-essentials              1.7.0            r342hf65ed6a_0    r
r-evaluate                0.10.1           r342hb679cc2_0    r
r-forcats                 0.2.0            r342h5fcb364_0    r
r-foreach                 1.4.3            r342h49221b0_4    r
r-foreign                 0.8_69           r342hbd6b6bb_0    r
r-formatr                 1.5              r342h0e06a18_0    r
r-ggplot2                 2.2.1            r342h8b6cf70_0    r
r-gistr                   0.4.0            r342h5cd5773_0    r
r-glmnet                  2.0_13           r342h0aac7f1_0    r
r-glue                    1.1.1            r342h3154e12_0    r
r-gower                   0.1.2            r342h54e18f5_0    r
r-gtable                  0.2.0            r342h8e3b2c8_0    r
r-haven                   1.1.0            r342h8909e7d_0    r
r-hexbin                  1.27.1           r342h72fd8d9_4    r
r-highr                   0.6              r342h2351100_0    r
r-hms                     0.3              r342ha729a9b_0    r
r-htmltools               0.3.6            r342h4080c21_0    r
r-htmlwidgets             0.9              r342h7fcc9b6_0    r
r-httpuv                  1.3.5            r342ha5ddd88_0    r
r-httr                    1.3.1            r342h7aba7de_0    r
r-ipred                   0.9_6            r342h7d58d5b_0    r
r-irdisplay               0.4.4            r342hc31a1b2_0    r
r-irkernel                0.8.9            r342hfe3cb8f_0    r
r-iterators               1.0.8            r342h4caec00_4    r
r-jsonlite                1.5              r342hf92f79e_0    r
r-kernlab                 0.9_25           r342hd770e69_0    r
r-kernsmooth              2.23_15          r342hdc3efa4_4    r
r-knitr                   1.17             r342h6500ef9_0    r
r-labeling                0.3              r342h7c30189_4    r
r-lattice                 0.20_35          r342h0f762c2_0    r
r-lava                    1.5.1            r342h598eca9_0    r
r-lazyeval                0.2.0            r342h346dbdc_0    r
r-lubridate               1.6.0            r342h47739ec_0    r
r-magrittr                1.5              r342h895a831_4    r
r-maps                    3.2.0            r342h79c810f_0    r
r-markdown                0.8              r342h4cc6e3e_0    r
r-mass                    7.3_47           r342hd8605c9_0    r
r-matrix                  1.2_11           r342h3a55fe1_0    r
r-mgcv                    1.8_22           r342h176cc83_0    r
r-mime                    0.5              r342h01856a9_0    r
r-miniui                  0.1.1            r342h33c7739_0    r
r-mnormt                  1.5_5            r342he1a489d_0    r
r-modelmetrics            1.1.0            r342h5a23eb1_0    r
r-modelr                  0.1.1            r342heb933ea_0    r
r-mongolite               1.2              r342hdcf03d2_0    r
r-munsell                 0.4.3            r342h79883fb_0    r
r-nlme                    3.1_131          r342h7f704e8_0    r
r-nnet                    7.3_12           r342ha98c111_0    r
r-numderiv                2016.8_1         r342h12eb246_0    r
r-odbc                    1.1.2            r342hf7c7794_0    r
r-openssl                 0.9.7            r342h1e3c16d_0    r
r-packrat                 0.4.8_1          r342h7bab2f7_0    r
r-pbdzmq                  0.2_6            r342h934a24f_0    r
r-pkgconfig               2.0.1            r342h5d9b92e_0    r
r-pki                     0.1_5.1          r342hba91d42_0    r
r-plogr                   0.1_1            r342h6d7f4c2_0    r
r-plyr                    1.8.4            r342h876901b_0    r
r-prodlim                 1.6.1            r342hd95c883_0    r
r-profvis                 0.3.3            r342h36dbb6c_0    r
r-pryr                    0.1.2            r342hf3bf84b_0    r
r-psych                   1.7.8            r342h1e2dc86_0    r
r-purrr                   0.2.3            r342h7916a1c_0    r
r-quantmod                0.4_11           r342h9c9c021_0    r
r-r6                      2.2.2            r342hcc750b5_0    r
r-randomforest            4.6_12           r342h41e62a9_4    r
r-rappdirs                0.3.1            r342h03ed50e_0    r
r-rbokeh                  0.5.0            r342h257354a_0    r
r-rcolorbrewer            1.1_2            r342h0dda8fb_0    r
r-rcpp                    0.12.13          r342h9f83869_0    r
r-rcpproll                0.2.2            r342hdd0cc16_0    r
r-rcurl                   1.95_4.8         r342hecb3894_0    r
r-readr                   1.1.1            r342hb25467c_0    r
r-readxl                  1.0.0            r342h1e5739b_0    r
r-recipes                 0.1.0            r342h0924b81_0    r
r-recommended             3.4.2                h1751db4_0    r
r-rematch                 1.0.1            r342he3f91f1_0    r
r-repr                    0.12.0           r342hde08b23_0    r
r-reshape2                1.4.2            r342h2e254a0_0    r
r-rjava                   0.9_9            r342h9890981_0    r
r-rjdbc                   0.2_5            r342he0388cf_0    r
r-rjsonio                 1.3_0            r342h5685322_4    r
r-rlang                   0.1.2            r342hc878738_0    r
r-rmarkdown               1.6              r342hacd9e3e_2    r
r-robustbase              0.92_7           r342h6021a74_0    r
r-rpart                   4.1_11           r342hd35cc14_0    r
r-rprojroot               1.2              r342hd69aa9e_0    r
r-rsconnect               0.8.5            r342h3a8d77b_0    r
r-rstudioapi              0.7              r342hedff9e9_0    r
r-rvest                   0.3.2            r342h8e81af5_0    r
r-scales                  0.5.0            r342h876bdd3_0    r
r-selectr                 0.3_1            r342hd6c1ff9_0    r
r-sfsmisc                 1.1_1            r342hadb04b4_0    r
r-shiny                   1.0.5            r342hc0a01ce_0    r
r-sourcetools             0.1.6            r342h519fec0_0    r
r-sparklyr                0.6.3            r342hac80a45_0    r
r-spatial                 7.3_11           r342hff2a1d0_4    r
r-stringi                 1.1.6            r342hf484d3e_0    r
r-stringr                 1.2.0            r342h701d218_0    r
r-survival                2.41_3           r342hac888f2_0    r
r-tibble                  1.3.4            r342h041fa31_0    r
r-tidyr                   0.7.1            r342h1bc61e7_0    r
r-tidyselect              0.2.2            r342h04f720c_0    r
r-tidyverse               1.1.1            r342hf9e2102_0    r
r-timedate                3012.100         r342h48d2e88_4    r
r-ttr                     0.23_2           r342hf82c04a_0    r
r-uuid                    0.1_2            r342h1393287_4    r
r-viridislite             0.2.0            r342h3706391_0    r
r-withr                   2.0.0            r342hfa1897f_0    r
r-xml2                    1.1.1            r342h3ff9a91_0    r
r-xtable                  1.8_2            r342hb75f6e7_0    r
r-xts                     0.10_0           r342h17852d6_4    r
r-yaml                    2.1.14           r342h72d8650_0    r
r-zoo                     1.8_0            r342h9faeba2_0    r
readline                  7.0                  ha6073c6_4    defaults
requests                  2.18.4           py36he2e5f8d_1    defaults
rope                      0.10.7           py36h147e2ec_0    defaults
rstudio                   1.1.383              h2c9cdda_2    r
ruamel_yaml               0.15.35          py36h14c3975_1    defaults
scikit-image              0.13.1           py36h14c3975_1    defaults
scikit-learn              0.19.1           py36h7aa7ec6_0    defaults
scipy                     1.0.0            py36hbf646e7_0    defaults
seaborn                   0.8.1            py36hfad7ec4_0    defaults
send2trash                1.4.2                    py36_0    defaults
setuptools                38.4.0                   py36_0    defaults
simplegeneric             0.8.1                    py36_2    defaults
singledispatch            3.4.0.3          py36h7a266c3_0    defaults
sip                       4.18.1           py36h51ed4ed_2    defaults
six                       1.11.0           py36h372c433_1    defaults
snowballstemmer           1.2.1            py36h6febd40_0    defaults
sortedcollections         0.5.3            py36h3c761f9_0    defaults
sortedcontainers          1.5.9                    py36_0    defaults
sphinx                    1.6.6                    py36_0    defaults
sphinxcontrib             1.0              py36h6d0f590_1    defaults
sphinxcontrib-websupport  1.0.1            py36hb5cb234_1    defaults
spyder                    3.2.6                    py36_0    defaults
sqlalchemy                1.2.1            py36h14c3975_0    defaults
sqlite                    3.22.0               h1bed415_0    defaults
statsmodels               0.8.0            py36h8533d0b_0    defaults
sympy                     1.1.1            py36hc6d1c1c_0    defaults
tblib                     1.3.2            py36h34cf8b6_0    defaults
terminado                 0.8.1                    py36_1    defaults
testpath                  0.3.1            py36h8cadb63_0    defaults
tk                        8.6.7                hc745277_3    defaults
toolz                     0.9.0                    py36_0    defaults
tornado                   4.5.3                    py36_0    defaults
traitlets                 4.3.2            py36h674d592_0    defaults
typing                    3.6.2            py36h7da032a_0    defaults
unicodecsv                0.14.1           py36ha668878_0    defaults
unixodbc                  2.3.4                hc36303a_1    defaults
urllib3                   1.22             py36hbe7ace6_0    defaults
wcwidth                   0.1.7            py36hdf4376a_0    defaults
webencodings              0.5.1            py36h800622e_1    defaults
werkzeug                  0.14.1                   py36_0    defaults
wheel                     0.30.0           py36hfd4bba0_1    defaults
widgetsnbextension        3.1.0                    py36_0    defaults
wrapt                     1.10.11          py36h28b7045_0    defaults
xlrd                      1.1.0            py36h1db9f0c_1    defaults
xlsxwriter                1.0.2            py36h3de1aca_0    defaults
xlwt                      1.3.0            py36h7b00a1f_0    defaults
xz                        5.2.3                h55aa19d_2    defaults
yaml                      0.1.7                had09818_2    defaults
zeromq                    4.2.2                hbedb6e5_2    defaults
zict                      0.1.3            py36h3a3bf81_0    defaults
zlib                      1.2.11               ha838bed_2    defaults

Thanks for your help.

Was this issue resolved? Facing the exact same issue from RHEL.

FernandezMathieu commented 4 years ago

Hello, I'm facing the same problem. Did anyone solved the problem ?

Conda info :

     active environment : base
    active env location : /appli/DTEC/bin/conda
            shell level : 1
       user config file : /home/miniconda/.condarc
 populated config files :
          conda version : 4.8.5
    conda-build version : not installed
         python version : 3.8.5.final.0
       virtual packages : __glibc=2.17
       base environment : /appli/DTEC/bin/conda  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /appli/DTEC/bin/conda/pkgs
                          /home/miniconda/.conda/pkgs
       envs directories : /appli/DTEC/bin/conda/envs
                          /home/miniconda/.conda/envs
               platform : linux-64
             user-agent : conda/4.8.5 requests/2.24.0 CPython/3.8.5 Linux/3.10.0-1127.el7.x86_64 rhel/7.8 glibc/2.17
                UID:GID : 0:0
             netrc file : None
           offline mode : False 

conda info (channel internal but it's mirror channel )

# Name                    Version                   Build  
_libgcc_mutex             0.1                 conda_forge  
_openmp_mutex             4.5                       1_gnu  
_r-mutex                  1.0.1               anacondar_1  
binutils_impl_linux-64    2.35                 h18a2f87_9  
binutils_linux-64         2.35                hc3fd857_29  
brotlipy                  0.7.0           py38h1e0a361_1000
bwidget                   1.9.14                        0  
bzip2                     1.0.8                h516909a_3  
c-ares                    1.16.1               h516909a_3  
ca-certificates           2020.6.20            hecda079_0  
cairo                     1.16.0            h3fc0475_1005  
certifi                   2020.6.20        py38h32f6830_0  
cffi                      1.14.3           py38h5bae8af_0  
chardet                   3.0.4           py38h32f6830_1007
conda                     4.8.5            py38h32f6830_1  
conda-package-handling    1.7.0            py38h1e0a361_5  
cryptography              3.1.1            py38h766eaa4_0  
curl                      7.71.1               he644dc0_8  
expat                     2.2.9                he1b5a44_2  
fontconfig                2.13.1            h1056068_1002  
freetype                  2.10.2               he06d7ca_0  
fribidi                   1.0.10               h516909a_0  
gcc_impl_linux-64         7.5.0               hda68d29_13  
gcc_linux-64              7.5.0               he2a3fca_29  
gettext                   0.19.8.1          hc5be6a0_1002  
gfortran_impl_linux-64    7.5.0               hfca37b7_17  
gfortran_linux-64         7.5.0               ha081f1e_29  
glib                      2.66.1               h680cd38_0  
gmp                       6.2.0                he1b5a44_2  
graphite2                 1.3.13            he1b5a44_1001  
gsl                       2.6                  h294904e_0  
gxx_impl_linux-64         7.5.0               h64c220c_13  
gxx_linux-64              7.5.0               h547f3ba_29  
harfbuzz                  2.7.2                hee91db6_0  
icu                       67.1                 he1b5a44_0  
idna                      2.10               pyh9f0ad1d_0  
jpeg                      9d                   h516909a_0  
kernel-headers_linux-64   2.6.32              h77966d4_13  
krb5                      1.17.1               hfafb76e_3  
ld_impl_linux-64          2.35                 h769bd43_9  
libblas                   3.8.0               17_openblas  
libcblas                  3.8.0               17_openblas  
libcurl                   7.71.1               hcdd3856_8  
libedit                   3.1.20191231         he28a2e2_2  
libev                     4.33                 h516909a_1  
libffi                    3.2.1             he1b5a44_1007  
libgcc-ng                 9.3.0               h5dbcf3e_17  
libgfortran-ng            7.5.0               hae1eefd_17  
libgfortran4              7.5.0               hae1eefd_17  
libglu                    9.0.0             he1b5a44_1001  
libgomp                   9.3.0               h5dbcf3e_17  
libiconv                  1.16                 h516909a_0  
liblapack                 3.8.0               17_openblas  
libnghttp2                1.41.0               h8cfc5f6_2  
libopenblas               0.3.10          pthreads_hb3c22a3
libpng                    1.6.37               hed695b0_2  
libsodium                 1.0.18               h516909a_1  
libssh2                   1.9.0                hab1572f_5  
libstdcxx-ng              9.3.0               h2ae2ef3_17  
libtiff                   4.1.0                hc7e4089_6  
libuuid                   2.32.1            h14c3975_1000  
libwebp-base              1.1.0                h516909a_3  
libxcb                    1.13              h14c3975_1002  
libxml2                   2.9.10               h68273f3_2  
lz4-c                     1.9.2                he1b5a44_3  
make                      4.3                  h516909a_0  
ncurses                   6.2                  he1b5a44_1  
openjdk                   8.0.265              h516909a_0  
openssl                   1.1.1h               h516909a_0  
pandoc                    2.10.1               h516909a_0  
pango                     1.42.4               h7062337_4  
pcre                      8.44                 he1b5a44_0  
pip                       20.2.3                     py_0  
pixman                    0.38.0            h516909a_1003  
pthread-stubs             0.4               h14c3975_1001  
pycosat                   0.6.3           py38h1e0a361_1004
pycparser                 2.20               pyh9f0ad1d_2  
pyopenssl                 19.1.0                     py_1  
pysocks                   1.7.1            py38h32f6830_1  
python                    3.8.5           h1103e12_9_cpytho
python_abi                3.8                      1_cp38  
r-abind                   1.4_5           r36h6115d3f_1003 
r-acepack                 1.4.1           r36h9bbef5b_1005 
r-ada                     2.0_5                  r36_1002  
r-ade4                    1.7_15            r36h7fa42b6_2  
r-anytime                 0.3.9             r36h0357c0b_0  
r-arules                  1.6_6             r36hcdcec82_0  
r-askpass                 1.1               r36hcdcec82_2  
r-assertthat              0.2.1             r36h6115d3f_2  
r-attempt                 0.3.1             r36h6115d3f_1  
r-backports               1.1.10            r36hcdcec82_0  
r-base                    3.6.3                he766273_3  
r-base64enc               0.1_3           r36hcdcec82_1004 
r-bbmisc                  1.11            r36hcdcec82_1003 
r-bh                      1.72.0_3          r36h6115d3f_1  
r-bigalgebra              0.8.4.1           r36h80f5a37_0  
r-biganalytics            1.1.21            r36he1b5a44_0  
r-biglm                   0.9_2             r36h9bbef5b_0  
r-bigmemory               4.5.36            r36h0357c0b_1  
r-bigmemory.sri           0.1.3           r36h6115d3f_1004 
r-biocmanager             1.30.10           r36h6115d3f_1  
r-bipartite               2.15              r36h0357c0b_1  
r-bit                     4.0.4             r36hcdcec82_0  
r-bit64                   4.0.5             r36hcdcec82_0  
r-bitops                  1.0_6           r36hcdcec82_1004 
r-blob                    1.2.1             r36h6115d3f_1  
r-bookdown                0.20              r36h6115d3f_0  
r-boot                    1.3_25            r36h6115d3f_1  
r-brew                    1.0_6           r36h6115d3f_1003 
r-broom                   0.7.1             r36h142f84f_0  
r-callr                   3.4.4             r36h6115d3f_0  
r-car                     3.0_10            r36h6115d3f_0  
r-cardata                 3.0_4             r36h6115d3f_0  
r-caret                   6.0_86            r36hcdcec82_2  
r-catools                 1.18.0            r36h0357c0b_1  
r-cellranger              1.1.0           r36h6115d3f_1003 
r-checkmate               2.0.0             r36hcdcec82_1  
r-chron                   2.3_56            r36hcdcec82_0  
r-class                   7.3_17            r36hcdcec82_1  
r-classint                0.4_3             r36h9bbef5b_1  
r-cli                     2.0.2             r36h6115d3f_1  
r-clipr                   0.7.0             r36h6115d3f_1  
r-cluster                 2.1.0             r36h9bbef5b_3  
r-coda                    0.19_4            r36h142f84f_0  
r-codetools               0.2_16          r36h6115d3f_1002 
r-coin                    1.3_1             r36hcdcec82_1  
r-colorspace              1.4_1             r36hcdcec82_2  
r-commonmark              1.7             r36hcdcec82_1002 
r-config                  0.3             r36h6115d3f_1003 
r-conquer                 1.0.2             r36h0357c0b_0  
r-corrplot                0.84                   r36_1003  
r-covr                    3.5.1             r36h0357c0b_0  
r-cowplot                 1.1.0             r36h6115d3f_0  
r-cpp11                   0.2.2             r36h142f84f_0  
r-cramer                  0.9_3             r36h6115d3f_2  
r-crayon                  1.3.4           r36h6115d3f_1003 
r-crosstalk               1.1.0.1           r36h6115d3f_1  
r-curl                    4.3               r36hcdcec82_1  
r-data.table              1.12.8            r36hcdcec82_1  
r-dbi                     1.1.0             r36h6115d3f_1  
r-dbplot                  0.3.3             r36h6115d3f_1  
r-dbplyr                  1.4.4             r36h6115d3f_0  
r-dbscan                  1.1_5             r36h0357c0b_1  
r-dendextend              1.14.0            r36h6115d3f_0  
r-desc                    1.2.0           r36h6115d3f_1003 
r-devtools                2.3.2             r36h6115d3f_0  
r-digest                  0.6.25            r36h0357c0b_2  
r-distr                   2.8.0             r36hcdcec82_2  
r-distributional          0.2.0             r36h6115d3f_0  
r-dockerfiler             0.1.3             r36h6115d3f_1  
r-doparallel              1.0.15            r36h6115d3f_1  
r-dosnow                  1.0.18                    r36_1  
r-dotcall64               1.0_0           r36h9bbef5b_1005 
r-dplyr                   1.0.2             r36h0357c0b_0  
r-dt                      0.15              r36h6115d3f_0  
r-e1071                   1.7_3             r36h0357c0b_1  
r-earth                   5.2.0             r36h9bbef5b_0  
r-ellipse                 0.4.2             r36h6115d3f_0  
r-ellipsis                0.3.1             r36hcdcec82_0  
r-emmeans                 1.5.1             r36h6115d3f_0  
r-esquisse                0.3.1             r36h6115d3f_0  
r-estimability            1.3             r36h6115d3f_1003 
r-evaluate                0.14              r36h6115d3f_2  
r-expint                  0.1_5             r36h96ca727_0  
r-extrafont               0.17                   r36_1002  
r-extrafontdb             1.0             r36h6115d3f_1003 
r-fable                   0.2.1             r36h0357c0b_0  
r-fabletools              0.2.1             r36h6115d3f_0  
r-factoextra              1.0.7                     r36_1  
r-factominer              2.3               r36h6115d3f_1  
r-fansi                   0.4.1             r36hcdcec82_1  
r-farver                  2.0.3             r36h0357c0b_1  
r-fastmap                 1.0.1             r36h0357c0b_1  
r-fastmatch               1.1_0           r36hcdcec82_1005 
r-ff                      4.0.2             r36he1b5a44_0  
r-ffbase                  0.13.1            r36hcdcec82_0  
r-fields                  11.5              r36h31ca83e_0  
r-fitdistrplus            1.1_1             r36h6115d3f_0  
r-flashclust              1.01_2          r36h9bbef5b_1005 
r-fnn                     1.1.3             r36h0357c0b_2  
r-forcats                 0.5.0             r36h6115d3f_1  
r-foreach                 1.5.0             r36h6115d3f_1  
r-foreign                 0.8_76            r36hcdcec82_1  
r-forge                   0.2.0             r36h6115d3f_3  
r-formula                 1.2_3           r36h6115d3f_1003 
r-fracdiff                1.5_1             r36hc57f18f_1  
r-fs                      1.5.0             r36h0357c0b_0  
r-future                  1.19.1            r36h6115d3f_0  
r-future.apply            1.6.0             r36h6115d3f_0  
r-gbm                     2.1.8             r36h0357c0b_0  
r-gdata                   2.18.0          r36h6115d3f_1003 
r-gdtools                 0.2.2             r36h36050f4_1  
r-generics                0.0.2           r36h6115d3f_1003 
r-geor                    1.8_1             r36hcdcec82_1  
r-ggplot2                 3.3.2             r36h6115d3f_0  
r-ggpubr                  0.4.0             r36h6115d3f_0  
r-ggrepel                 0.8.2             r36h0357c0b_1  
r-ggsci                   2.9             r36h6115d3f_1003 
r-ggsignif                0.6.0             r36h6115d3f_1  
r-ggthemes                4.2.0             r36h6115d3f_2  
r-ggvis                   0.4.6             r36h142f84f_0  
r-gh                      1.1.0             r36h6115d3f_1  
r-git2r                   0.27.1            r36h7253d3a_0  
r-glmnet                  4.0_2             r36h9bbef5b_0  
r-globals                 0.13.0            r36h6115d3f_0  
r-glue                    1.4.2             r36hcdcec82_0  
r-gmodels                 2.18.1                 r36_1003  
r-golem                   0.2.1             r36h6115d3f_1  
r-gower                   0.2.2             r36hcdcec82_0  
r-gplots                  3.1.0             r36h6115d3f_0  
r-gridextra               2.3             r36h6115d3f_1003 
r-grplasso                0.4_7                     r36_0  
r-gstat                   2.0_6             r36hcdcec82_0  
r-gsubfn                  0.7             r36h6115d3f_1002 
r-gtable                  0.3.0             r36h6115d3f_3  
r-gtools                  3.8.2             r36hcdcec82_1  
r-haven                   2.3.1             r36hde08347_0  
r-here                    0.1             r36h6115d3f_1003 
r-hexbin                  1.28.1            r36h9bbef5b_1  
r-highr                   0.8               r36h6115d3f_2  
r-hmisc                   4.4_1             r36h9bbef5b_0  
r-hms                     0.5.3             r36h6115d3f_1  
r-hrbrthemes              0.8.0             r36h6115d3f_1  
r-htmltable               2.1.0             r36h6115d3f_0  
r-htmltools               0.5.0             r36h0357c0b_0  
r-htmlwidgets             1.5.2             r36h142f84f_0  
r-httpuv                  1.5.4             r36h0357c0b_0  
r-httr                    1.4.2             r36h6115d3f_0  
r-hunspell                3.0             r36h0357c0b_1002 
r-igraph                  1.2.5             r36hd626d4e_1  
r-iml                     0.10.1            r36h6115d3f_0  
r-ini                     0.3.1           r36h6115d3f_1003 
r-intervals               0.15.2            r36h0357c0b_1  
r-inum                    1.0_1             r36h6115d3f_2  
r-ipred                   0.9_9             r36hcdcec82_2  
r-isoband                 0.2.2             r36h0357c0b_0  
r-iterators               1.0.12            r36h6115d3f_1  
r-jpeg                    0.1_8.1           r36hcdcec82_1  
r-jsonlite                1.7.1             r36hcdcec82_0  
r-kableextra              1.2.1             r36h6115d3f_0  
r-kendall                 2.2               r36ha65eedd_0  
r-keras                   2.3.0.0           r36h6115d3f_0  
r-kernlab                 0.9_29            r36h51c796c_2  
r-kernsmooth              2.23_17           r36hfa343cc_1  
r-knitr                   1.30              r36h6115d3f_0  
r-labeling                0.3             r36h6115d3f_1003 
r-labelled                2.7.0             r36h6115d3f_0  
r-later                   1.1.0.1           r36h0357c0b_0  
r-lattice                 0.20_41           r36hcdcec82_2  
r-latticeextra            0.6_29            r36h6115d3f_1  
r-lava                    1.6.8             r36h6115d3f_0  
r-lazyeval                0.2.2             r36hcdcec82_2  
r-leaps                   3.1               r36h9bbef5b_1  
r-libcoin                 1.0_6             r36h7fa42b6_0  
r-lifecycle               0.2.0             r36h6115d3f_1  
r-listenv                 0.8.0             r36h6115d3f_1  
r-lme4                    1.1_23            r36h0357c0b_1  
r-lmtest                  0.9_38            r36h9bbef5b_0  
r-lpsolve                 5.6.15            r36hcdcec82_1  
r-lsei                    1.3_0             r36h6e990d7_0  
r-lsmeans                 2.30_0            r36h6115d3f_2  
r-lubridate               1.7.9             r36h0357c0b_0  
r-magrittr                1.5             r36h6115d3f_1003 
r-manipulatewidget        0.10.1            r36h6115d3f_1  
r-maps                    3.3.0           r36hcdcec82_1004 
r-maptools                1.0_2             r36hcdcec82_0  
r-markdown                1.1               r36hcdcec82_1  
r-mass                    7.3_53            r36hcdcec82_0  
r-matrix                  1.2_18            r36h7fa42b6_3  
r-matrixmodels            0.4_1           r36h6115d3f_1003 
r-matrixstats             0.57.0            r36hcdcec82_0  
r-memoise                 1.1.0           r36h6115d3f_1004 
r-metrics                 0.1.4           r36h6115d3f_1002 
r-mgcv                    1.8_33            r36h7fa42b6_0  
r-microbenchmark          1.4_7             r36hcdcec82_1  
r-mime                    0.9               r36hcdcec82_1  
r-minicran                0.2.14            r36h6115d3f_0  
r-miniui                  0.1.1.1         r36h6115d3f_1002 
r-minqa                   1.2.4           r36h6786f55_1005 
r-mlr                     2.17.1            r36hcdcec82_1  
r-modelmetrics            1.2.2.2           r36h0357c0b_1  
r-modelr                  0.1.8             r36h6115d3f_0  
r-modeltools              0.2_23            r36h6115d3f_1  
r-moments                 0.14                   r36_1003  
r-multcomp                1.4_14            r36h6115d3f_0  
r-munsell                 0.5.0           r36h6115d3f_1003 
r-mvtnorm                 1.1_1             r36h9bbef5b_0  
r-network                 1.16.0            r36hcdcec82_1  
r-networkd3               0.4             r36h6115d3f_1004 
r-nlme                    3.1_149           r36h9bbef5b_0  
r-nloptr                  1.2.2.2           r36h0357c0b_0  
r-nlp                     0.2_0             r36h6115d3f_2  
r-nnet                    7.3_14            r36hcdcec82_1  
r-npsurv                  0.5_0             r36h6115d3f_0  
r-numderiv                2016.8_1.1        r36h6115d3f_3  
r-odbc                    1.2.3             r36h0357c0b_0  
r-openssl                 1.4.3             r36he5c4762_0  
r-openxlsx                4.2.2             r36h0357c0b_0  
r-orcutt                  2.3               r36h6115d3f_0  
r-parallelmap             1.5.0             r36h6115d3f_1  
r-paramhelpers            1.14              r36hcdcec82_1  
r-party                   1.3_5             r36h516909a_0  
r-partykit                1.2_9             r36hcdcec82_0  
r-pbkrtest                0.4_8.6           r36h6115d3f_0  
r-penalized               0.9_51          r36h51c796c_1005 
r-permute                 0.9_5             r36h6115d3f_3  
r-pillar                  1.4.6             r36h6115d3f_0  
r-piper                   0.6.1.3           r36h6115d3f_0  
r-pixmap                  0.4_11          r36h6115d3f_1003 
r-pkgbuild                1.1.0             r36h6115d3f_0  
r-pkgconfig               2.0.3             r36h6115d3f_1  
r-pkgload                 1.1.0             r36h0357c0b_0  
r-plogr                   0.2.0           r36h6115d3f_1003 
r-plotly                  4.9.2.1           r36h6115d3f_1  
r-plotmo                  3.6.0             r36h6115d3f_0  
r-plotrix                 3.7_8             r36h6115d3f_1  
r-plumber                 1.0.0             r36h6115d3f_0  
r-plyr                    1.8.6             r36h0357c0b_1  
r-pmml                    2.0.0             r36h6115d3f_0  
r-png                     0.1_7           r36hcdcec82_1004 
r-polynom                 1.4_0             r36h6115d3f_2  
r-praise                  1.0.0           r36h6115d3f_1004 
r-prediction              0.3.14            r36h6115d3f_2  
r-prettyunits             1.1.1             r36h6115d3f_1  
r-proc                    1.16.2            r36h0357c0b_1  
r-processx                3.4.4             r36hcdcec82_0  
r-prodlim                 2019.11.13        r36h0357c0b_1  
r-progress                1.2.2             r36h6115d3f_2  
r-progressr               0.6.0             r36h6115d3f_1  
r-promises                1.1.1             r36h0357c0b_0  
r-proto                   1.0.0                  r36_2003  
r-prroc                   1.3.1                  r36_1002  
r-ps                      1.3.4             r36hcdcec82_0  
r-purrr                   0.3.4             r36hcdcec82_1  
r-quadprog                1.5_8             r36hfa343cc_2  
r-quantmod                0.4.17            r36h6115d3f_1  
r-quantreg                5.73              r36hb7af6a2_0  
r-questionr               0.7.2             r36h6115d3f_0  
r-r.cache                 0.14.0            r36h6115d3f_1  
r-r.methodss3             1.8.1             r36h6115d3f_0  
r-r.oo                    1.24.0            r36h6115d3f_0  
r-r.utils                 2.10.1            r36h6115d3f_0  
r-r2d3                    0.2.3           r36h6115d3f_1002 
r-r6                      2.4.1             r36h6115d3f_1  
r-randomfields            3.3.8             r36h0357c0b_1  
r-randomfieldsutils       0.5.3             r36h6786f55_3  
r-randomforest            4.6_14          r36h9bbef5b_1003 
r-randtoolbox             1.30.1            r36h9bbef5b_1  
r-ranger                  0.12.1            r36h0357c0b_1  
r-rappdirs                0.3.1           r36hcdcec82_1004 
r-rcmdcheck               1.3.3             r36h6115d3f_3  
r-rcolorbrewer            1.1_2           r36h6115d3f_1003 
r-rcpp                    1.0.5             r36h0357c0b_0  
r-rcpparmadillo           0.9.900.3.0       r36h51c796c_0  
r-rcppeigen               0.3.3.7.0         r36h51c796c_2  
r-rcpproll                0.3.0           r36h0357c0b_1002 
r-rcurl                   1.98_1.2          r36hcdcec82_1  
r-readr                   1.3.1           r36h0357c0b_1004 
r-readxl                  1.3.1             r36hde08347_4  
r-recipes                 0.1.13            r36h6115d3f_0  
r-rematch                 1.0.1           r36h6115d3f_1003 
r-rematch2                2.1.2             r36h6115d3f_1  
r-remotes                 2.2.0             r36h6115d3f_0  
r-renv                    0.12.0            r36h6115d3f_0  
r-reprex                  0.3.0             r36h6115d3f_2  
r-reshape                 0.8.8             r36hcdcec82_2  
r-reshape2                1.4.4             r36h0357c0b_1  
r-reticulate              1.16              r36h0357c0b_0  
r-rex                     1.2.0             r36h6115d3f_1  
r-rgl                     0.100.54          r36ha687ee4_1  
r-rio                     0.5.16          r36h6115d3f_1002 
r-rjava                   0.9_13            r36hcdcec82_3  
r-rjdbc                   0.2_8             r36h6115d3f_1  
r-rlang                   0.4.7             r36hcdcec82_0  
r-rle                     0.9.2             r36h0eb13af_0  
r-rlecuyer                0.3_4             r36h96ca727_0  
r-rlist                   0.4.6.1         r36h6115d3f_1003 
r-rmarkdown               2.4               r36h142f84f_0  
r-rmdformats              0.3.7             r36h6115d3f_1  
r-rngwell                 0.10_6            r36hcdcec82_1  
r-rocr                    1.0_11            r36h6115d3f_1  
r-roxygen2                7.1.1             r36h0357c0b_0  
r-rpart                   4.1_15            r36hcdcec82_2  
r-rpart.plot              3.0.9             r36h6115d3f_0  
r-rprojroot               1.3_2           r36h6115d3f_1003 
r-rsqlite                 2.2.1             r36h1b71b39_0  
r-rstatix                 0.6.0             r36h6115d3f_0  
r-rstudioapi              0.11              r36h6115d3f_1  
r-rttf2pt1                1.3.8             r36hcdcec82_1  
r-rversions               2.0.2             r36h6115d3f_0  
r-rvest                   0.3.6             r36h6115d3f_0  
r-sampling                2.8             r36h516909a_1003 
r-sandwich                3.0_0             r36h142f84f_0  
r-scales                  1.1.1             r36h6115d3f_0  
r-scatterplot3d           0.3_41          r36h6115d3f_1003 
r-selectr                 0.4_2             r36h6115d3f_1  
r-sessioninfo             1.1.1           r36h6115d3f_1002 
r-sfsmisc                 1.1_7             r36h6115d3f_0  
r-shape                   1.4.5                     r36_0  
r-shiny                   1.5.0             r36h6115d3f_0  
r-shinywidgets            0.5.3             r36h6115d3f_0  
r-slam                    0.1_47            r36hc57f18f_2  
r-smotefamily             1.3.1             r36h6115d3f_3  
r-sna                     2.5               r36hcdcec82_1  
r-snow                    0.4_3           r36h6115d3f_1002 
r-snowballc               0.7.0             r36hcdcec82_1  
r-sodium                  1.1             r36hcdcec82_1002 
r-sourcetools             0.1.7           r36he1b5a44_1002 
r-sp                      1.4_2             r36hcdcec82_0  
r-spacetime               1.2_3             r36h6115d3f_1  
r-spam                    2.5_1             r36hbf399a0_2  
r-sparsem                 1.78              r36h9bbef5b_1  
r-spatial                 7.3_12            r36hcdcec82_1  
r-speedglm                0.3_2                  r36_1003  
r-splancs                 2.01_40         r36h9bbef5b_1005 
r-splitstackshape         1.4.8             r36h6115d3f_2  
r-sqldf                   0.4_11            r36h6115d3f_2  
r-squarem                 2020.4            r36h6115d3f_0  
r-startupmsg              0.9.6             r36h6115d3f_2  
r-statmod                 1.4.34            r36h6e990d7_1  
r-statnet.common          4.4.1             r36h0eb13af_0  
r-stringi                 1.5.3             r36h604b29c_0  
r-stringr                 1.4.0             r36h6115d3f_2  
r-strucchange             1.5_2             r36hcdcec82_1  
r-styler                  1.3.2             r36h6115d3f_1  
r-suppdists               1.1_9.5           r36h0357c0b_1  
r-survival                3.2_7             r36hcdcec82_0  
r-swagger                 3.33.1            r36h142f84f_0  
r-sys                     3.4               r36hcdcec82_0  
r-systemfonts             0.3.2             r36h7563bbe_0  
r-teachingdemos           2.12              r36h6115d3f_1  
r-tensorflow              2.2.0             r36h6115d3f_0  
r-testthat                2.3.2             r36h0357c0b_1  
r-tfruns                  1.4             r36h6115d3f_1002 
r-th.data                 1.0_10            r36h6115d3f_2  
r-tibble                  3.0.3             r36hcdcec82_0  
r-tidyr                   1.1.2             r36h0357c0b_0  
r-tidyselect              1.1.0             r36h6115d3f_0  
r-tidyverse               1.3.0             r36h6115d3f_2  
r-timedate                3043.102        r36h6115d3f_1002 
r-tinytex                 0.26              r36h6115d3f_0  
r-tm                      0.7_7             r36h0357c0b_1  
r-tree                    1.0_40            r36hcdcec82_1  
r-tseries                 0.10_47           r36hfa343cc_4  
r-tsibble                 0.9.2             r36h6115d3f_0  
r-ttr                     0.24.2            r36hcdcec82_0  
r-urca                    1.3_0           r36h9bbef5b_1005 
r-usethis                 1.6.3             r36h6115d3f_0  
r-utf8                    1.1.4           r36hcdcec82_1003 
r-vctrs                   0.3.4             r36hcdcec82_0  
r-vegan                   2.5_6             r36hbf399a0_2  
r-viridis                 0.5.1           r36h6115d3f_1004 
r-viridislite             0.3.0           r36h6115d3f_1003 
r-vroom                   1.3.2             r36h1b71b39_0  
r-webshot                 0.5.2             r36h6115d3f_1  
r-webutils                1.1               r36hcdcec82_1  
r-whisker                 0.4               r36h6115d3f_1  
r-withr                   2.3.0             r36h6115d3f_0  
r-wordcloud2              0.2.1             r36h6115d3f_0  
r-xfun                    0.18              r36hcdcec82_0  
r-xlsx                    0.6.4.2           r36h6115d3f_0  
r-xlsxjars                0.6.1             r36h6115d3f_3  
r-xml                     3.99_0.3          r36hcdcec82_1  
r-xml2                    1.3.2             r36h0357c0b_1  
r-xopen                   1.0.0           r36h6115d3f_1003 
r-xtable                  1.8_4             r36h6115d3f_3  
r-xts                     0.12.1            r36hcdcec82_0  
r-yaml                    2.2.1             r36hcdcec82_1  
r-zeallot                 0.1.0           r36h6115d3f_1002 
r-zip                     2.1.1             r36hcdcec82_0  
r-zoo                     1.8_8             r36hcdcec82_0  
readline                  8.0                  he28a2e2_2  
requests                  2.24.0             pyh9f0ad1d_0  
ruamel_yaml               0.15.80         py38h1e0a361_1002
sed                       4.8                  hbfbb72e_0  
setuptools                49.6.0           py38h32f6830_1  
six                       1.15.0             pyh9f0ad1d_0  
sqlite                    3.33.0               h4cf870e_0  
sysroot_linux-64          2.12                h77966d4_13  
tk                        8.6.10               hed695b0_0  
tktable                   2.10                 h555a92e_3  
tqdm                      4.50.0             pyh9f0ad1d_0  
unixodbc                  2.3.9                h0e019cf_0  
urllib3                   1.25.10                    py_0  
wheel                     0.35.1             pyh9f0ad1d_0  
xorg-kbproto              1.0.7             h14c3975_1002  
xorg-libice               1.0.10               h516909a_0  
xorg-libsm                1.2.3             h84519dc_1000  
xorg-libx11               1.6.12               h516909a_0  
xorg-libxau               1.0.9                h14c3975_0  
xorg-libxdmcp             1.1.3                h516909a_0  
xorg-libxext              1.3.4                h516909a_0  
xorg-libxrender           0.9.10            h516909a_1002  
xorg-renderproto          0.11.1            h14c3975_1002  
xorg-xextproto            7.3.0             h14c3975_1002  
xorg-xproto               7.0.31            h14c3975_1007  
xz                        5.2.5                h516909a_1  
yaml                      0.2.5                h516909a_0  
zlib                      1.2.11            h516909a_1009  
zstd                      1.4.5                h6597ccf_2  
FernandezMathieu commented 4 years ago

I finally found a solution. GCC 4.9 introduces a newer C++ ABI

So two solution can solve the problem :

Be careful after solving this problem, a new problem appear with the libuuid.so.1 version. I think the best thing to do is to update environment to RHEL8.

Regards,