Open lchong opened 6 years ago
amayer21
commented
4 years ago Hello,
Did you manage to solve that issue? We have a similar one...
Error message is [Errno 28] No space left on device: '/home/u/u211131/miniconda3/pkgs/
There is plenty of space left in the folder and plenty of inodes available.
We use to be able to install packages there, but it stopped working recently and now we can't install any.
Any help would be greatly appreciated.
Thank you very much,
All the best,
Alice
amayer21
commented
4 years ago In case it helps, here are the output of conda info
active environment : base
active env location : /home/u/u211131/miniconda3
shell level : 1
user config file : /home/u/u211131/.condarc
populated config files : /home/u/u211131/.condarc
conda version : 4.8.2
conda-build version : not installed
python version : 3.7.3.final.0
virtual packages : __glibc=2.17
base environment : /home/u/u211131/miniconda3 (writable)
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/bioconda/linux-64
https://conda.anaconda.org/bioconda/noarch
https://repo.anaconda.com/pkgs/main/linux-64
https://repo.anaconda.com/pkgs/main/noarch
https://repo.anaconda.com/pkgs/r/linux-64
https://repo.anaconda.com/pkgs/r/noarch
package cache : /home/u/u211131/miniconda3/pkgs
/home/u/u211131/.conda/pkgs
envs directories : /home/u/u211131/miniconda3/envs
/home/u/u211131/.conda/envs
platform : linux-64
user-agent : conda/4.8.2 requests/2.21.0 CPython/3.7.3 Linux/3.10.0-327.4.5.el7.x86_64 rhel/7.2 glibc/2.17
UID:GID : 126606:126606
netrc file : None
offline mode : Falseand conda list --show-channel-urls
# packages in environment at /home/u/u211131/miniconda3:
#
# Name Version Build Channel
_libgcc_mutex 0.1 main conda-forge
anaconda-clean 1.1.0 py37_1 defaults
asn1crypto 0.24.0 py37_0 defaults
ca-certificates 2019.11.28 hecc5488_0 conda-forge
certifi 2019.11.28 py37_0 conda-forge
cffi 1.12.2 py37h2e261b9_1 defaults
chardet 3.0.4 py37_1 defaults
conda 4.8.2 py37_0 conda-forge
conda-package-handling 1.6.0 py37h516909a_1 conda-forge
cryptography 2.6.1 py37h1ba5d50_0 defaults
git-lfs 2.10.0 0 conda-forge
idna 2.8 py37_0 defaults
libedit 3.1.20181209 hc058e9b_0 defaults
libffi 3.2.1 hd88cf55_4 defaults
libgcc-ng 8.2.0 hdf63c60_1 defaults
libstdcxx-ng 8.2.0 hdf63c60_1 defaults
ncurses 6.1 he6710b0_1 defaults
openssl 1.1.1d h516909a_0 conda-forge
pip 19.0.3 py37_0 defaults
pycosat 0.6.3 py37h14c3975_0 defaults
pycparser 2.19 py37_0 defaults
pyopenssl 19.0.0 py37_0 defaults
pysocks 1.6.8 py37_0 defaults
python 3.7.3 h0371630_0 defaults
readline 7.0 h7b6447c_5 defaults
requests 2.21.0 py37_0 defaults
ruamel_yaml 0.15.46 py37h14c3975_0 defaults
setuptools 41.0.0 py37_0 defaults
six 1.12.0 py37_0 defaults
sqlite 3.27.2 h7b6447c_0 defaults
tk 8.6.8 hbc83047_0 defaults
tqdm 4.42.1 py_0 conda-forge
urllib3 1.24.1 py37_0 defaults
wheel 0.33.1 py37_0 defaults
xz 5.2.4 h14c3975_4 defaults
yaml 0.1.7 had09818_2 defaults
zlib 1.2.11 h7b6447c_3 defaultsThank you very much!
amayer21
commented
4 years ago Hello, me again. I'd like to apologise, we found the problem and it was specific to our cluster. In brief (in case somebody get into the same problem): we currently use only 30% of our disk inode numbers, BUT the disk is composed of different filesets and the somebody created 2E6 files in the fileset we were working in over the last week, so that specific fileset ran out of inode numbers. So problem solved for us (not sure about the original post though). All the best, Alice
Hi there,
I'm having an issue any time I try to install/uninstall packages in conda. The commands succeed until the "Executing transaction" stage and then the following error occurs:
There is plenty of space left in the anaconda directory, and I've also checked the directory specified by TMPDIR and it has lots of space. I've tried updating TMPDIR to a different directory as well and nothing changes. I've checked inodes and there are lots available, and I'm able to create new directories and files in the anaconda directory without issues.
I get the same error no matter which package I try to install/uninstall.
Any insights into why this might be happening? I've tried downloading and installing a newer anaconda version (5.2.0), and am having the exact same problem with that installation too.
Thanks for your help!
Anaconda or Miniconda version: Anaconda 5.1.0
Operating System: CentOS release 6.7
conda infoconda list --show-channel-urls