Coolgenome iTALK issues

Coolgenome / iTALK

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issues

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how long it takes to calculate the DEGS by using DEG()

#38 xinmiaoyan opened 1 year ago
0
question about classification of L-R database

#37 jinyuanchun opened 1 year ago
0
italk plot

#36 chenx9 opened 2 years ago
0
Can only map two cell types when plotting DE genes

#35 whitneyt1 opened 2 years ago
0
issues when installing ITALK

#34 xinmiaoyan opened 2 years ago
1
Can the new version of the tool add some down stream analysis function in this tool?

#33 WangXiang50 opened 2 years ago
0
class of the ligands

#32 adesalegn opened 2 years ago
0
cell_col of LRPlot is not working.

#31 wajm closed 3 years ago
0
how to add enrichment information on circoplots

#30 adesalegn opened 3 years ago
0
Error: Maybe your `gap.degree` is too large so that there is no space to allocate sectors.

#29 rosanababu opened 3 years ago
0
Significant Alterations Over Time

#28 Swilson6 opened 3 years ago
1
could not find function "uh"

#27 sailseem opened 3 years ago
1
About batch effects

#26 LClungcancer opened 3 years ago
0
Ligand receptor interaction: SPP1-S1PR1

#25 LTTLE closed 3 years ago
0
Error in `[.Seurat`(data, data$cell_type == i, ) : Incorrect number of logical values provided to subset features

#24 EAC-T opened 3 years ago
2
from SEURAT to text data

#23 EAC-T closed 3 years ago
0
link.arr.type='big.arrow' nothing shown

#22 sailseem opened 3 years ago
0
Error when running DEG

#21 jamrute closed 3 years ago
0
error in DEG code

#20 fzhang988 opened 3 years ago
0
Potential error in FindLR for datatype = 'DEG' ?

#19 dlmatera opened 4 years ago
14
Detailed tutorial

#18 singcell opened 4 years ago
1
Error: `order` should contain names of all sectors. when running LRPlot with DEG datatype

#17 whitneyt1 opened 4 years ago
2
N/A in DEGs and converting Seurat DEG to dataframe for FindLR

#16 Jennifer-Foltz opened 4 years ago
2
Found more than one class "DataFrame" in cache; using the first, from namespace 'PythonEmbedInR' Also defined by ‘S4Vectors’ Error in DESeqDataSet(se, design = design, ignoreRank) : some values in assay are not integers

#15 whitneyt1 opened 4 years ago
1
rawParse Error: Error in `colnames<-`(`*tmp*`, value = c("gene", "exprs", "cell_type")) : attempt to set 'colnames' on an object with less than two dimensions

#14 oh111 opened 4 years ago
2
Failed to install 'iTALK'...unable to access index for respo

#13 whitneyt1 opened 4 years ago
6
When used the FindLR, the result has InF in the logFC

#12 zh-Bian opened 4 years ago
0
what information should be in the cell_type column?

#11 kaizen89 opened 4 years ago
2
Error in `E<-`(`*tmp*`, value = `*vtmp*`) : invalid indexing

#10 PaulaVac opened 4 years ago
1
Error in `E<-`(`*tmp*`, value = `*vtmp*`) : invalid indexing

#9 Yale73 opened 4 years ago
2
Colors on Network Plot Do Not Match Colors on LR Plot

#8 AndreaLGardner opened 4 years ago
1
Database for mice

#7 Key0624 opened 4 years ago
3
Color links by cell of origin

#6 PGmajev closed 4 years ago
2
Cannot install the package

#5 DirtyHarry80 opened 4 years ago
1
DEG analysis for multiple celltypes

#4 gitbuckley opened 4 years ago
3
More documentation?

#3 davisidarta opened 4 years ago
1
Raw input

#2 RBBurl1227 opened 5 years ago
5
DEG MASTTest issue

#1 el-stew closed 4 years ago
1

Coolgenome / iTALK

issues

how long it takes to calculate the DEGS by using DEG()

question about classification of L-R database

italk plot

Can only map two cell types when plotting DE genes

issues when installing ITALK

Can the new version of the tool add some down stream analysis function in this tool?

class of the ligands

cell_col of LRPlot is not working.

how to add enrichment information on circoplots

Error: Maybe your `gap.degree` is too large so that there is no space to allocate sectors.

Significant Alterations Over Time

could not find function "uh"

About batch effects

Ligand receptor interaction: SPP1-S1PR1

Error in `[.Seurat`(data, data$cell_type == i, ) : Incorrect number of logical values provided to subset features

from SEURAT to text data

link.arr.type='big.arrow' nothing shown

Error when running DEG

error in DEG code

Potential error in FindLR for datatype = 'DEG' ?

Detailed tutorial

Error: `order` should contain names of all sectors. when running LRPlot with DEG datatype

N/A in DEGs and converting Seurat DEG to dataframe for FindLR

Found more than one class "DataFrame" in cache; using the first, from namespace 'PythonEmbedInR' Also defined by ‘S4Vectors’ Error in DESeqDataSet(se, design = design, ignoreRank) : some values in assay are not integers

rawParse Error: Error in `colnames<-`(`tmp`, value = c("gene", "exprs", "cell_type")) : attempt to set 'colnames' on an object with less than two dimensions

Failed to install 'iTALK'...unable to access index for respo

When used the FindLR, the result has InF in the logFC

what information should be in the cell_type column?

Error in `E<-`(`tmp`, value = `vtmp`) : invalid indexing

Error in `E<-`(`tmp`, value = `vtmp`) : invalid indexing

Colors on Network Plot Do Not Match Colors on LR Plot

Database for mice

Color links by cell of origin

Cannot install the package

DEG analysis for multiple celltypes

More documentation?

Raw input

DEG MASTTest issue