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Core-Bioinformatics / MASLD-NASH

scripts associated with NAFLD-NASH project
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Annotated files #1

Open boyangzhang1993 opened 1 month ago

boyangzhang1993 commented 1 month ago

Hi,

is that possible to upload annotated count matrix such as Aggr_Jan2022_pre-processed.rds?

Thanks, Boyang

JaBa90 commented 1 month ago

Hi,

This would also be very helpful for me.

Thanks, Jan

AnaHowellsFerreira commented 5 days ago

Hi! I am also looking for metadata information from this dataset for running script pre-processing/4.Add-Different-Metadata-CHECK_v2.R

load the seurat obj

seu = readRDS('/sutherland-scratch/rc845/Vallier/NAFLD-Gribben/4.Analysis/1.Preprocess_data/1.Pre-process-data/Pre-processed_data/2.Aggr_samples/2.Aggr-ALL/4.Aggr-52-samples-Aug2021/Aggr_52_samples_Aug_2021_renamed.rds')

load the metadata info from table

dt <- fread('/sutherland-scratch/rc845/Vallier/NAFLD-Gribben/4.Analysis/1.Preprocess_data/1.Pre-process-data/Scripts/Disease status summary 63 samples updated__25_08_21_AC_cleaned.csv')

Thank you!