= Description =

Find and fix the origin of the test failure.

= Context =

!SBMLBioModelsImportTest tests the access to the !BioModels data base; queries to !BioModels - through the !BioServices python package - does not seem to work anymore.

= Success criteria =

Models can be imported from !BioModels data base.

= Error log = {{{ cobra/solvers/glpk_solver.py:14 [NON-XML-CHAR-0x1B][1;31mRuntimeWarning[NON-XML-CHAR-0x1B][0m: PyGLPK compiled on GLPK 4.43, but runtime is GLPK 4.45

E

ERROR: test_biomodels_import (main.SBMLTestCase)

Traceback (most recent call last): File "/home/bertrand/dev-git/biopredyn/build/Prototype/testing/test.py", line 42, in test_biomodels_import source='urn:miriam:biomodels.db:BIOMD0000000001') File "/home/bertrand/.local/lib/python2.7/site-packages/biopredyn-0.1.0-py2.7.egg/biopredyn/model.py", line 68, in init self.init_tree() File "/home/bertrand/.local/lib/python2.7/site-packages/biopredyn-0.1.0-py2.7.egg/biopredyn/model.py", line 219, in init_tree s = BioModels() File "/usr/local/lib/python2.7/dist-packages/bioservices/biomodels.py", line 114, in init super(BioModels, self).init(name="BioModels", url=BioModels._url, verbose=verbose) File "/usr/local/lib/python2.7/dist-packages/bioservices/services.py", line 223, in init super(WSDLService, self).init(name, url, verbose=verbose) File "/usr/local/lib/python2.7/dist-packages/bioservices/services.py", line 86, in init super(Service, self).init(level=verbose) File "/usr/local/lib/python2.7/dist-packages/easydev/logging_tools.py", line 48, in init self.debugLevel = level File "/usr/local/lib/python2.7/dist-packages/easydev/logging_tools.py", line 61, in _set_level raise ValueError("The level of debugging must be in %s " %valid_level) ValueError: The level of debugging must be in ['INFO', 'DEBUG', 'WARNING', 'CRITICAL', 'ERROR']

Ran 1 test in 0.001s

FAILED (errors=1) }}}

Cosmo-Tech / biopredyn

SBMLBioModelsImportTest not passing anymore #92

E

ERROR: test_biomodels_import (main.SBMLTestCase)