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CostaLab / CrossTalkeR

R package to do the Ligand Receptor Analysis Visualization
https://costalab.github.io/CrossTalkeR/
MIT License
41 stars 10 forks source link

installation error #28

Closed zhanglab2008 closed 3 years ago

zhanglab2008 commented 3 years ago

Dear Team, Nice work. I have installation issue. Do you know what might cause the issue? I am running R 4.0 on ubuntu. Thanks, Zhang

library(CrossTalkeR)

Bioconductor version 3.12 (BiocManager 1.30.12), ?BiocManager::install for help Error: package or namespace load failed for ‘CrossTalkeR’: .onLoad failed in loadNamespace() for 'org.Hs.eg.db', details: call: l$contains error: $ operator is invalid for atomic vectors In addition: Warning messages: 1: call dbDisconnect() when finished working with a connection 2: replacing previous import ‘dplyr::union’ by ‘igraph::union’ when loading ‘CrossTalkeR’ 3: replacing previous import ‘dplyr::as_data_frame’ by ‘igraph::as_data_frame’ when loading ‘CrossTalkeR’ 4: replacing previous import ‘dplyr::groups’ by ‘igraph::groups’ when loading ‘CrossTalkeR’ 5: replacing previous import ‘clusterProfiler::simplify’ by ‘igraph::simplify’ when loading ‘CrossTalkeR’

zhanglab2008 commented 3 years ago

I found out that this is a bug in Rstudio. I have solved it so I'll close the issue.