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CostaLab / CrossTalkeR

R package to do the Ligand Receptor Analysis Visualization
https://costalab.github.io/CrossTalkeR/
MIT License
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igraph error #3

Closed sohitmiglani closed 3 years ago

sohitmiglani commented 3 years ago

Hello,

I was running your software on my data when I came across the following error (below). How do I resolve this ?

R[write to console]: Reading Files

CTR "filtered_corrected.csv" [1] 6 EXP "filtered_corrected.csv" [1] 6 R[write to console]: Create a Differential Table

R[write to console]: Error in igraph::E<-(*tmp*, value = *vtmp*) : invalid indexing Calls: ... generate_report -> create_diff_table_wip ->

R[write to console]: In addition: R[write to console]: Warning message:

R[write to console]: In max(table(final_data$cellpair)) : R[write to console]:

R[write to console]: no non-missing arguments to max; returning -Inf

jsnagai commented 3 years ago

Hi @sohitmiglani, Can you check the following

1 - if you are using the following characters in celltype name: '_' and '\' 2 - if you have any missing values (NA) on your input table 3 - if in your "MeanLR" you are using '.' or ',' to separate the decimals

Also, is it possible to you share how you are using the CrossTalkeR?

Best