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CostaLab / CrossTalkeR

R package to do the Ligand Receptor Analysis Visualization
https://costalab.github.io/CrossTalkeR/
MIT License
41 stars 10 forks source link

Error: processing vignette 'CrossTalkeR.Rmd' failed with diagnostics: #53

Closed yl315504 closed 1 year ago

yl315504 commented 1 year ago

Hi All, I had an error when creating vignettes. Please see the error below. Any idea how to fix it? Thanks!

── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────── ✔ checking for file 'C:\Users\Yan Liu\AppData\Local\Temp\RtmpkxR5Qo\remotes63a05faf5839\CostaLab-CrossTalkeR-312e957/DESCRIPTION' ... ─ preparing 'CrossTalkeR': ✔ checking DESCRIPTION meta-information ... ─ installing the package to build vignettes E creating vignettes (57.9s) --- re-building 'CrossTalkeR.Rmd' using rmarkdown Quitting from lines 45-71 (./Comparative_Condition_cci.Rmd) Error: processing vignette 'CrossTalkeR.Rmd' failed with diagnostics: Length of new attribute value must be 1 or 25, the number of target edges, not 24 --- failed re-building 'CrossTalkeR.Rmd'

SUMMARY: processing the following file failed: 'CrossTalkeR.Rmd'

Error: Vignette re-building failed. Execution halted Error: Failed to install 'CrossTalkeR' from GitHub: ! System command 'Rcmd.exe' failed

jsnagai commented 1 year ago

Dear @yl315504,

We are working to make a new release of CrossTalkeR soon. The most updated version can be found using the lttf-branch. If not too much work, would it be possible to test this one instead

devtools::install_github("CostaLab/CrossTalkeR",ref="lttf-devel")

Best

vckraemer commented 1 year ago

Dear @yl315504 ,

you can retry installing with building the vignette with the master branch. The issue should be fixed now. If the issue still occurs please let us know.

Best