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CostaLab / PILOT

Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)
https://pilot.readthedocs.io/
MIT License
8 stars 2 forks source link

Upload the package to PyPI #6

Open VladimirShitov opened 2 months ago

VladimirShitov commented 2 months ago

Hi! Thanks again for the amazing tool, and congratulations on the publication!

Do you have any plans to upload the package to PyPi? That would make installation much easier with just pip install. Additionally, other developers could use your package in their tools.

Anaconda repositories would be nice as well because you have R dependencies :)

mehdijoodaki commented 1 month ago

Hi! Yes, we are working on it and we have already published it on PyPI! We'll update the repo soon! Best, PILOT team

On Wed, Apr 10, 2024 at 1:23 PM Vladimir Shitov @.***> wrote:

Hi! Thanks again for the amazing tool, and congratulations on the publication!

Do you have any plans to upload the package to PyPi? That would make installation much easier with just pip install. Additionally, other developers could use your package in their tools.

Anaconda repositories would also be nice as well because you have R dependencies :)

— Reply to this email directly, view it on GitHub https://github.com/CostaLab/PILOT/issues/6, or unsubscribe https://github.com/notifications/unsubscribe-auth/AJMPGAMGFVTAGBI6E4ND7A3Y4UOLBAVCNFSM6AAAAABGAH5EC6VHI2DSMVQWIX3LMV43ASLTON2WKOZSGIZTKMZWGA2TONI . You are receiving this because you are subscribed to this thread.Message ID: @.***>

farhadmd7 commented 1 week ago

Hi, thanks for publishing the package on PyPI.

Is there any reason for the restriction with the exact 3.11.5 version of Python? I installed the repo locally in an environment with another Python version (3.10 and 3.11) and used the package only partially (e.x tl.wasserstein_distance), and it is working.

The same question regarding restricting scanpy to be <1.10.0 and seaborn to be <0.13.0, since newer versions of scanpy for instance are delivering some new interesting functionalities.

Thank you very much in advance Best, Farhad