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CostaLab / reg-gen

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
https://reg-gen.readthedocs.io/
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TDF issue #248

Open iorilondon opened 1 year ago

iorilondon commented 1 year ago

Hi,

I have created a set of .fasta files of the relevant lncRNA. They are all set out the exact same way. However, when I run the promotertest function, some of them are smooth sailing, whereas others give up the following error (see attached).

image

Any clue what is going on?

chaochungkuo commented 1 year ago

Hi @iorilondon,

Could you show me the header of Gm3940.fasta? Is there "chr" in the header? I think I have some clue but not that sure yet.

chaochungkuo commented 1 year ago

A fix is committed to the develop branch. Please let me know if it helps.