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CostaLab / scMEGA

scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
https://costalab.github.io/scMEGA
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Error in Running SelectTFs #15

Closed LalicJ closed 1 year ago

LalicJ commented 1 year ago

Hi,Sorry to bother you. When I run SelectTFs function, I met the following error: Error in cor.test.default(mat1[x, ], mat2[x, ]) : not enough finite observations. I don't know what went wrong, any suggestions? Thanks!

lzj1769 commented 1 year ago

Hi,

This message is basically saying that there is something wrong with correlation estimation.

Can you check the estimated matrix and see if they were correctly generated?

lzj1769 commented 1 year ago

Hi @cacaonib ,

Would it be possible to share the data so I can reproduce the error?

Thanks and best, Zhijian

LalicJ commented 1 year ago

sorry, the data is unpublished. But I guess it was the poor data quality of snATAC-seq.