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CostaLab / scMEGA

scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference
https://costalab.github.io/scMEGA
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script for preparing data #20

Closed htong3031 closed 1 year ago

htong3031 commented 1 year ago

Dear author,

I have noted that the script of cleaning the data and preparing neccessary objects is found in https://costalab.ukaachen.de/open_data/scMEGA/Fibroblast/01_prepare_data.html. However, I failed to identify the project and required folder ("../../../VisiumHeartRevision/IntegrativeAnalysis/Fibroblast/data/snATAC") in the tutorial. Where should I find that?

Thank you.

lzj1769 commented 1 year ago

Hi @htong3031

With this example script, we want to show how to prepare the data from an ArchR project. Currently, we have not made this data avaialble, as the size is quite large.