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CovertLab / wcEcoli

Whole Cell Model of E. coli
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Anerobic simulation timed out at 7 hours sim time #1417

Open 1fish2 opened 6 months ago

1fish2 commented 6 months ago 
26209.00    195.50        1.582        1.195        1.000        2.524        3.481
26210.00    195.50        1.582        1.195        1.000        2.524        3.482
========  ========  ===========  ===========  ===========  ===========  ===========
Traceback (most recent call last):
  File "/home/groups/mcovert/pyenv/versions/wcEcoli3/lib/python3.11/site-packages/fireworks/core/rocket.py", line 261, in run
    m_action = t.run_task(my_spec)
               ^^^^^^^^^^^^^^^^^^^
  File "/scratch/groups/mcovert/jenkins/workspace/wholecell/fireworks/firetasks/simulationDaughter.py", line 93, in run_task
    sim.run()
  File "/scratch/groups/mcovert/jenkins/workspace/wholecell/sim/simulation.py", line 263, in run
    raise SimulationException('Simulation time limit reached without cell division')
wholecell.sim.simulation.SimulationException: Simulation time limit reached without cell division
Time (s)  Dry mass     Dry mass      Protein          RNA    Small mol     Expected
              (fg)  fold change  fold change  fold change  fold change  fold change
========  ========  ===========  ===========  ===========  ===========  ===========
26211.00    195.51        1.582        1.195        1.000        2.524        3.482

Simulation finished:
 - Sim length: 3:00:00
 - Sim end time: 7:16:51
 - Runtime: 0:24:00