This PR makes adjustments to the synth_prob_from_ppgpp function that is used by our model to calculate per-copy synthesis probabilities of each promoter. A new optional argument was added to this function which, if set to True, will balance out the per-copy synthesis probabilities of rRNA promoters such that these values are always identical to one other regardless of the ppGpp concentration. The default value of this argument is set to True.
This PR makes adjustments to the
synth_prob_from_ppgppfunction that is used by our model to calculate per-copy synthesis probabilities of each promoter. A new optional argument was added to this function which, if set toTrue, will balance out the per-copy synthesis probabilities of rRNA promoters such that these values are always identical to one other regardless of the ppGpp concentration. The default value of this argument is set toTrue.