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CovertLab / wcEcoli

Whole Cell Model of E. coli
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Evaluation order effects #78

Open jmason42 opened 6 years ago

jmason42 commented 6 years ago

@heejochoi mentioned that the processes affiliated with two component systems may have a fixed evaluation order for some purpose. Need to identify what this is, and decide how to address it.

jmason42 commented 6 years ago

Perhaps this is the line in question: https://github.com/CovertLab/wcEcoli/blob/a1db154fb576924715b4bbd24496db54a1479c45/models/ecoli/processes/two_component_system.py#L48 If so, then it's not an evaluation order effect but rather a priority effect.

jmason42 commented 6 years ago

Heejo confirmed that the precedence effect she mentioned is tied to the above lines. It sounds like removing the partitioning logic will also remove the need for this prioritization.