How can I get the targetFILE in SpliSER_diffSpliSER_analysis_forVersion014plus.Rmd

CraigIDent / SpliSER

Bioinformatic tool for Splice site Strength Estimation using RNA-seq

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How can I get the targetFILE in SpliSER_diffSpliSER_analysis_forVersion014plus.Rmd #2

Closed shangguandong1996 closed 1 year ago

shangguandong1996 commented 1 year ago

Hi, Dr Dent.

I am reading your Rmd, but I find it seems that there is no information about producing targetFILE in https://github.com/CraigIDent/SpliSER/blob/7a29383362fea6a640e3473dd352e05481561a23/SpliSER_diffSpliSER_analysis_forVersion014plus.Rmd#L33

So I am wondering whether you can help me:)

Best wishes

Guandong Shang

CraigIDent commented 1 year ago

Hi, thanks for getting in touch. I've updated the README file to explain how to create a target file (at the bottom of the README). I've also included an example target file that you can use as a starting point for your own data!