Craven-Biostat-Lab / morphology-prediction

Predictive modeling of cell morphology: an IGVF project.
MIT License
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Establish the WT profiles for Cell Painting data #1

Closed sverchkov closed 1 year ago

sverchkov commented 1 year ago

Which wells can be considered WT profiles as a baseline for establishing the "change in morphology" phenotype?

It looks like the ORF negative controls and the CRISPR no-guide and non-targeting perturbations are good candidates.

sverchkov commented 1 year ago

Methods for establishing the phenotype:

sverchkov commented 1 year ago

We've established a binary definition based on counts of features outside of 2 standard deviations of controls