CroBiAd / DAWN

Diversity Among Wheat geNomes (DAWN)
http://crobiad.agwine.adelaide.edu.au/dawn/
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Add Links to Dbxref and Ontology_term associated with gene models #4

Closed nathanhaigh closed 5 years ago

nathanhaigh commented 5 years ago

Functional annotation was added to the gene models. These include PFAM, InterPro and GO.

It would be good to provide users with a link out to databases with information about these DB references.

nathanhaigh commented 5 years ago

This can be achieved through callbacks defining functions of the form fmtDetailValue_* (where * is the GFF3 attribute tag: http://gmod.org/wiki/JBrowse_Configuration_Guide#Customizing_CanvasFeatures_tracks_with_callbacks

The following gist will help: https://gist.github.com/sestaton/ff9424f28b165e761e934f078f07249f

nathanhaigh commented 5 years ago

Fix up the code by:

See: https://gist.github.com/nathanhaigh/e7a6cca1bb38704059493359e055c91b

nathanhaigh commented 5 years ago

I implemented both Dbxref and Ontology_term code for HC and LC genes tracks: image

I also added Ontology_term linking for SO in Transposable Elements tracks: image