Chromosome scolling beyond limits

CroBiAd / DAWN

Diversity Among Wheat geNomes (DAWN)

http://crobiad.agwine.adelaide.edu.au/dawn/

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Chromosome scolling beyond limits #7

Closed nathanhaigh closed 5 years ago

nathanhaigh commented 5 years ago

It is possible to scroll beyond the end of a chromosome. The end coord stays the same as the chrom end coord, but the start coord ends up being larger than the end of the chrom and the range displayed goes into negative territory.

cmdcolin commented 5 years ago

If you are using prepare-refseqs with indexed fasta I might have found a bug fix for this https://github.com/GMOD/jbrowse/commit/475f1f55ed6f477ec2ce40d63807e23c02d72445

nathanhaigh commented 5 years ago

@cmdcolin that commit will fix the issue i.e. end coordinate was being output as a string in the refSeqs.json file instead of an numerical. I've manually modified my refSeqs.json file to unquote the end value.