CshlSiepelLab / RPHAST

RPHAST: Phylogenetic Analysis with Space/Time Models in R
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Rphast installation fails to link to lapack library #5

Open crmwiggers opened 1 year ago

crmwiggers commented 1 year ago

Hi,

I receive the following error while installing rphast (devtools::install_github("siepellab/RPHAST"))

configure: error: Error linking to R's lapack library. Check R installation. ERROR: configuration failed for package ‘rphast’'

This lapack library linkage only fails for rphast installation (it correctly links for other packages such as Rcpp). How could I properly install rphast?

Thank you

sessionInfo() R version 4.0.1 (2020-06-06) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core)

Matrix products: default BLAS/LAPACK: /n/app/openblas/0.2.19/lib/libopenblas_core2p-r0.2.19.so

locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages: [1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached): [1] Rcpp_1.0.6 compiler_4.0.1 later_1.1.0.1 urlchecker_1.0.1 [5] prettyunits_1.1.1 profvis_0.3.7 remotes_2.4.2 tools_4.0.1
[9] digest_0.6.29 pkgbuild_1.3.1 pkgload_1.3.0 memoise_2.0.1
[13] lifecycle_1.0.1 rlang_1.0.4 shiny_1.6.0 cli_3.3.0
[17] curl_4.3 fastmap_1.1.0 withr_2.5.0 stringr_1.4.0
[21] fs_1.5.2 htmlwidgets_1.5.3 devtools_2.4.4 rprojroot_2.0.2
[25] glue_1.6.2 R6_2.5.1 processx_3.4.5 sessioninfo_1.2.2 [29] callr_3.5.1 purrr_0.3.4 magrittr_2.0.1 ps_1.6.0
[33] promises_1.2.0.1 ellipsis_0.3.2 htmltools_0.5.3 usethis_2.1.6
[37] mime_0.10 xtable_1.8-4 httpuv_1.5.5 stringi_1.5.3
[41] miniUI_0.1.1.1 cachem_1.0.4 crayon_1.5.1

Rohit-Satyam commented 1 year ago

Were you able to resolve this issue? I am getting the same error

kowaae22 commented 1 year ago

I have also gotten the same error and am emailing the support email listed on the readme page.