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D3DEnergetic / FIDASIM

A Neutral Beam and Fast-ion Diagnostic Modeling Suite
http://d3denergetic.github.io/FIDASIM/
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reding hdf5 file #272

Closed KlaraBogar closed 5 months ago

KlaraBogar commented 5 months ago

I am starting to use this version of FIDASIM. I tried to use plot_inputs and also plot_outputs. The values from the original hdf5 file dataset is read by .value (for example: r = eq["/fields/r"].value). However, this approach already does not work for newer versions of h5py and results in the error "'Dataset' object has no attribute 'value'". It is necessary to use for example [...] or [()] (r = eq["/fields/r"][...] or r = eq["/fields/r"][()]).

lstagner commented 5 months ago

The issue has been resolved on the master branch. We are currently in the process of preparing for FIDASIM 3.0 which includes the fixes. Feel free to switch over to the master branch as it is relatively stable but I recommend using v2.0 for any publications.