DASL-Lab / provoc

PROportions of Variants of Concern using counts, coverage, and a variant matrix.
https://dasl-lab.github.io/provoc/
MIT License
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Don't fail if one sample fails #50

Closed DBecker7 closed 3 months ago

DBecker7 commented 3 months ago

As is, if there's one problematic sample (as defined in by_col), the whole thing returns an error.

Add a try_catch() statement in process_optim(), along with an output message and an entry in the class object.

Perhaps add a condition that the whole thing fails if the first 10% all fail.

DBecker7 commented 3 months ago

Do this after #42.