Re-write `provoc_optim` in C++ (if possible)

DASL-Lab / provoc

PROportions of Variants of Concern using counts, coverage, and a variant matrix.

https://dasl-lab.github.io/provoc/

MIT License

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Re-write `provoc_optim` in C++ (if possible) #7

Closed DBecker7 closed 3 months ago

DBecker7 commented 7 months ago

Input and output can be changed according to the needs.

Currently it prints messages to the console. This is not necessary, but is nice.

If the by argument is specified (#2), then it should be applied to all groups (preferably all in C++). Messages would still be optional.

Since the function uses the built-in optimization routines applied to the binomial distribution, this may not be easy. Any speed improvements are appreciated.

DBecker7 commented 3 months ago

Closed as wontfix