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DBM-MCF / qupath-extension-efficientv2unet

A QuPath extension for using Efficient V2 UNet
Apache License 2.0
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Loading mask not always consistent #3

Closed loicsauteur closed 5 months ago

loicsauteur commented 5 months ago

Sometimes predicted masks are not loaded. Find out why.

loicsauteur commented 5 months ago

probably due to the file names, when they contain multiple file type extensions, e.g.: blabla.vsi - 20x-1.tif

loicsauteur commented 5 months ago

Linked exported temp images (for prediction) to ImageEntries with a map. Skipped adding objects from mask, where there is no objects. Trying to add those objects would actually abort the loops skipping subsequent images and other down-stream functions.