This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.
The docker command on the 'usage' page of readthedocs pairs the user's directory to docker directory '/out', but then the argument referring to this directory later in the command is '/output' (which throws an error)
The docker command on the 'usage' page of readthedocs pairs the user's directory to docker directory '/out', but then the argument referring to this directory later in the command is '/output' (which throws an error)