Output nnU-Net inference/prediction routines as derivatives

DCAN-Labs / BIBSnet

This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model. It can easily be included in other processing pipelines and for circumventing JLF within Nibabies.

https://bibsnet.readthedocs.io/en/latest/

Apache License 2.0

4 stars 8 forks source link

Output nnU-Net inference/prediction routines as derivatives #139

Open LuciMoore opened 1 month ago

LuciMoore commented 1 month ago

A short summary of what you would like to see in BIBSnet.

Append --save_npz to inference/prediction routines and save files to derivative directory

Do you have any interest in helping implement the feature?

Yes!

Add any additional information or context about the request here.

No response